Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq73 170 2e-37 seq39 107 2e-18 >seq73 Length=143992 Score = 170 bits (188), Expect = 2e-37 Identities = 647/998 (65%), Gaps = 48/998 (5%) Strand=Plus/Minus Query 62715 TCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 62774 || |||||||| ||||| || | ||| || || ||||||||||| ||||| |||||| Sbjct 51307 TCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTCTTGTTAGAATATTCAGCC 51248 Query 62775 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62834 || |||| ||| |||||||| ||||||||| |||| | ||| || || ||| Sbjct 51247 TCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAATTGAAAGTAAGTATCTTG 51188 Query 62835 --ACCACATCCT--TCAGTTTGAGAAAATCAAATCGCCCA--TCTA----TTACAAACAT 62884 | || | | | | || ||| |||||| | | || ||||| || | Sbjct 51187 CAAGCAGAATGTAATAACTT----AAAGTCAAATTCGAGAGTTTTAGTGTTTACATACTT 51132 Query 62885 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62944 ||| || | || || || ||||| || || || ||||||| | | |||||| | Sbjct 51131 TGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCAC 51072 Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 ||||| ||| | || ||| |||| ||||| |||| || | ||||| ||| | Sbjct 51071 AATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTA 51012 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 ||||| || ||||| || | ||| | ||||| || |||||||| || |||| || || Sbjct 51011 ATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGAT 50952 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCG----- 63119 || ||| | | | | || | | | |||| | || | | |||||| Sbjct 50951 AGCAAACCAAAGGGTTTGCGCGGGAACTGT---TTTGCGAC-CCATGC-CTTTCGACTCA 50897 Query 63120 TA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATT 63177 || ||||||||| || ||| || || ||||||||||| | || | ||| ||| | Sbjct 50896 TAACTAGTGTATA--ATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACT 50839 Query 63178 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 63237 |||| || |||||||| | ||| | | | | | | | || | |||||| || || || | Sbjct 50838 CATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTG 50779 Query 63238 GAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63296 | ||||| | || ||| || | || || | || ||||| || || ||| Sbjct 50778 GGATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTT 50720 Query 63297 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63356 ||||| ||||| | | |||||||| |||||| || || | ||| ||||| || | Sbjct 50719 CGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGC---AAAT 50663 Query 63357 CCAGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 | || ||| ||| ||||||||||| | || | ||| || | ||| | | || Sbjct 50662 GAA--CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTC 50605 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 | | ||| || ||||| || || || ||||| || ||| || || | ||||| Sbjct 50604 TGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAACTGG 50548 Query 63472 ---CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 |||| || || |||| || |||||| || ||||| | ||| || | ||| | Sbjct 50547 AGGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCAC 50488 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 || | | | |||||| | ||||| || |||||| | || | ||| || || | Sbjct 50487 ATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGC 50428 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 ||||||||||||| || ||||||| | || || | || |||| ||||| ||| Sbjct 50427 AGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAA 50368 Query 63649 ACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC 63685 | |||| | || | ||| |||||| ||||| || || Sbjct 50367 ATAATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 50331 >seq39 Length=443216 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||| ||||| | || ||| ||| ||||||||||| || |||||||||||||||| Sbjct 41480 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 41539 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || |||||||| || || || ||||| ||||||||||||| ||| || | Sbjct 41540 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGGCGCAGAAGCTACCCG 41599 Query 33416 AAAAGAAGATTCCTTCTACTGC 33437 |||| || |||||||| ||||| Sbjct 41600 AAAATAAAATTCCTTCCACTGC 41621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946561479120