Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq45 145 6e-30 seq73 109 5e-19 >seq45 Length=276350 Score = 145 bits (160), Expect = 6e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||| |||||||| ||||| ||||| | || |||||||| | || ||||| |||||| Sbjct 157900 GTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAA 157841 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | ||||| | || || | || || ||||||||||||||||| ||||| ||| Sbjct 157840 CCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCC 157781 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||||||||| || || ||||| || ||||| || ||||| || || | || ||| Sbjct 157780 GATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGAT 157721 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || ||||| ||||| ||||| || | || ||||| || Sbjct 157720 TATAACATACAAAAGGAATCGACGCTTCACTTAGTGTT 157683 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || |||||||| |||| | ||||| || ||| Sbjct 46007 ATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAGT 45948 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| || |||||||| |||||||| |||||| Sbjct 45947 GATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGATCAA 45888 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || || || |||| || |||||| | || || ||||| Sbjct 45887 CAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAAT 45828 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || || | ||||| || ||| |||| ||||| || Sbjct 45827 ATTCAAAAAGAGTCTACTTTGCATTTGGTGTTGAGATTACGCGGTGG 45781 >seq73 Length=143992 Score = 109 bits (120), Expect = 5e-19 Identities = 287/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||| || || || || || || || | |||||||||||| || | || Sbjct 52134 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 52075 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | || | ||||| | | ||| || | | |||| || || || || Sbjct 52074 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 52015 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 || || |||| || | |||||| || ||||| |||| |||||||||||| ||| Sbjct 52014 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 51955 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||| | ||| ||| || ||||| || |||||||| || | | | | | Sbjct 51954 ATGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCT 51895 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAAT--AATTTTGTTTCGCA 129076 | ||||||||| || ||||| || | || || || | |||||| | |||||||| || Sbjct 51894 TGTGGTATTTCATCGATGTTTTGTAAACTTCCATTATATGCAATTAATTTTTGTTT--CA 51837 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTG---TTTATTA 129133 | || || || | | || || || | |||||| | |||| | | | |||| | Sbjct 51836 TTTGGTCATTCCAGAGATCCAATTGAACCAAATCAT---TCAATAAATGGGGATTTACAA 51780 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 | ||| || || | | ||||| ||| ||||| ||| ||| | || ||||| | Sbjct 51779 CGAAAAATTCGCCAGAAAGGACGCGACGATAATAAATATTGCAAGTGTAAGGTTCAAAAG 51720 Query 129194 ATTCATTGTTGCCTA 129208 |||| |||| |||| Sbjct 51719 ATTCGCTGTTTCCTA 51705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727580534330