Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq45 123 2e-23 seq39 118 1e-21 >seq45 Length=276350 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||||||||| |||||||| || ||||| |||||||| ||| | || || || | Sbjct 157898 AAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACC 157839 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | ||| | || | || || | ||||| |||||||||||| |||| Sbjct 157838 TAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGA 157779 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || || |||| || || ||||| |||| |||| || || || || || Sbjct 157778 TCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTA 157719 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||||||| ||||||| || || ||| | | ||||||| || Sbjct 157718 TAACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 157668 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || ||||| |||||||| ||||||||||| | || || ||| ||| Sbjct 46007 ATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAGT 45948 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | || || | || || ||||||||||| | || ||| Sbjct 45947 GATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGATCAA 45888 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || || || || |||| ||||| || |||||||| Sbjct 45887 CAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAAT 45828 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || ||||| || | || ||||||||||| || Sbjct 45827 ATTCAAAAAGAGTCTACTTTGCATTTGGTGTTG 45795 >seq39 Length=443216 Score = 118 bits (130), Expect = 1e-21 Identities = 384/595 (65%), Gaps = 61/595 (10%) Strand=Plus/Plus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||||||||| || ||||||||| || || | ||||||||||| ||||||||| Sbjct 41509 CCCTCGTCCCTGGAGATTAGTTCGTTGGAAAAGGTTAGCCCGGGCATGAGCCCGCGTTTT 41568 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 || ||||||||||||||| ||| || |||||||| || | || || || |||| | | Sbjct 41569 TTCAGCCAAAATATGGCGCAGAAGCTACCCGAAAATAAAATTCCTTCCACTGCCGTGTAG 41628 Query 133036 GCCACCAGGCGC-TCG---CCGAACGTGGCT-------------TCTTTGCTGGCGATCC 133078 |||||| ||| | ||| || || | || | || | || ||||| Sbjct 41629 GCCACCTGGCTCATCGGGTCCTTACCAGCCTCTCAGCAAAGGAGTTTTCGTTGTTGATCC 41688 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGA-CGCACGGCATCGTTTCGATGGCGTTCAAC 133137 | | |||||| || ||||| | || ||| || || || || | ||| ||| Sbjct 41689 ACCTGGCCGCCCACTCCGCCTTCTTACGGATCGC-GGGAATGGTCTCCACGGCCCGAAAC 41747 Query 133138 AAACGGAGTT------TCTCTTCC--GAGGAAC----------GC-ACGTAGGTGTCGAT 133178 | | | || |||||||| || | || || | || ||| || Sbjct 41748 AGGTGCATTTTCTCACTCTCTTCCTGGATGTACTTGTCTATGAGCAAACTACGTGAAGAA 41807 Query 133179 GAGGGT-CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGC 133237 | || | |||||| || || |||| |||||||| | || ||||| | |||||| Sbjct 41808 AAAAGTACCTATACATCTCTGAATGTATGTTCTCCACAGTAATCTGAAATACATAAAAGA 41867 Query 133238 ACCGCGCCTCGACCACCTGCACTTC-TTGAGCGAAACGCTCGACCAGATTTTCGTTGACG 133296 || ||||||| | | || ||| || || || | | || ||| |||||| || Sbjct 41868 ACTGCGCCTCCAGAAGCTTCACGTCATTTAGAAATTTGGCCG-CCAAATTTTCCAGCACA 41926 Query 133297 ATGCCGTC--------------------GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 || ||||| ||||| || || ||||||| ||| ||||| | Sbjct 41927 ATTCCGTCACTAATATGAGACAGGCTTACCTGGCCGCAAAGAAGGCCAACACATGCTTTA 41986 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCA 133396 | || || |||||| ||| |||| | | ||||||||| | ||| || || ||| | Sbjct 41987 TAAAGTGCCGCTCGCCGTCAGTCAAACCCAACCAGTCGCGAGAGTCGGTGCCCAAGTCAA 42046 Query 133397 CCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTC 133451 |||| || || |||||||| || |||| || |||||||| | | |||| ||||| Sbjct 42047 CCTCTTCAACTGTCCAAAATGAAGCCTGAGCCTTTTTGTAGAAATTCCAAATGTC 42101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172287322880