Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq58 426 1e-113 seq14 154 1e-31 seq27 111 1e-18 >seq58 Length=597893 Score = 426 bits (472), Expect = 1e-113 Identities = 1101/1649 (67%), Gaps = 50/1649 (3%) Strand=Plus/Plus Query 517093 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTT-TTCTTGTTATCTGCTTCTT 517151 ||| || || | |||||| || || |||||| || || || ||||| | ||| |||| Sbjct 218061 ATAGTTCTCAAGTTCATTCTTGGATTCAACA-CACCTCTTCTTCTTTTCATCATCTTCCC 218119 Query 517152 CAAA-TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 517210 ||| |||| | ||||| || ||| || ||||| | | | || | |||||| Sbjct 218120 TAAACTTCTCT-GCTTCAGCAACCATCCTATCAATGTCTTGCTGTGAAAGTCTTCCCTTG 218178 Query 517211 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 517270 | ||| || ||||| | || | | || ||| || || || || |||| ||| | Sbjct 218179 TCATTTGTTATAGTTACATGTTCAGTCTTTCCTGTCGACTTGTCGGCAGCAGACACTGTC 218238 Query 517271 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 517330 | |||||||||||||| | ||||| ||||||| ||| || || || ||||| ||||| Sbjct 218239 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 218298 Query 517331 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 517390 || || || || ||||| ||| | || || ||| || || || | ||| Sbjct 218299 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 218358 Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 || || ||||| | ||||| |||| | ||||| |||| | || ||||||||| | Sbjct 218359 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAAT--T 218416 Query 517451 CTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508 || | | || || || || || || ||||| || | |||||||| ||| | Sbjct 218417 CTTGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGC 218476 Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 517568 | || || || | || || || || ||||||||||| | || | | || ||| | | Sbjct 218477 CGGCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCT 218536 Query 517569 T--TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 517626 | | || ||| | ||| | ||| || || |||| ||| || ||||| || || || Sbjct 218537 TGCTAGATT-GTTCG-CCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGC 218594 Query 517627 TTCATCAGGATTAACAGTTTCATTTA----GTTTTTTACCATTGAAAAAATTTGAAAGAA 517682 ||| || || |||| || |||| ||| ||| ||||||||||| | || | Sbjct 218595 TTCGTCTGGGTTAA----TTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCA 218650 Query 517683 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742 ||| || |||||| ||||| | || ||||| || | ||| | |||||| | ||| Sbjct 218651 ATTGCTGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCT 218710 Query 517743 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCCGCTCTAAAC 517801 ||||||| | || ||| ||| ||||||| || ||| | || | | | ||| Sbjct 218711 TCTTATCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAA-AGTGTTTTTGAAC 218769 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 | || | ||| || || |||||| | || ||||| | || | | || || || || Sbjct 218770 ATTTCGGCACAGAGCTCCTCGAATCTGGCCCTAGTGATGTTGCAACTGTAGTCGATGCCA 218829 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 517921 || || | || || || ||||||| | || || || |||| | ||||||||| Sbjct 218830 TCAAATATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCA 218889 Query 517922 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT- 517980 ||||||||| ||| || ||||| ||||| || | || |||| || |||| | || Sbjct 218890 CGTTCACATTGTGTTCTAAGTCTACGTAATGCACGT-CT-ATTGGTTGAAATATTCTTCC 218947 Query 517981 ----ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 || |||| ||| || || || || || | | || | | || ||||| || | Sbjct 218948 CGCCATTCTTTCGCTTAAAGTCATCTACGCAAAAGTTGACCAATCTGTTGTCAAAGTCCT 219007 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 |||| ||||| | |||| ||| || || |||| | |||| |||||||| | || Sbjct 219008 CACCGCCCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAG 219067 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 |||| | |||||| || ||||| |||| ||| ||||| | ||||| |||| Sbjct 219068 TTAAAATTGATACATCGAAAGTGCCACCGCCCAAATCGAAAATCAACACATTTTTTTCAG 219127 Query 518157 T-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 || | | || || || | |||||| |||| || ||||||||||||||||| ||||| Sbjct 219128 AAGTACCT--TTCTTGTCCATACCATAGGCAATTGCGGCAGCAGTTGGTTCATTGATAAT 219185 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | || |||||| | |||||||| | || || || |||||||| |||| ||| ||||| Sbjct 219186 ACGCATAACATTTAACCCAGCAATGGTACCAGCGTCCTTAGTGGCCTGTCGTTGAGAATC 219245 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGC 518333 ||||||||| || || ||||| ||||| |||| || | | ||||| |||| ||||| Sbjct 219246 GTTAAAATAAGCGGGTACAGTGATAACAGCATTAGAGATTGTCTTTCCCAA-ATAAGATT 219304 Query 518334 TTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTG 518391 ||| ||| ||||| || | | | ||| || || |||| ||||| |||| | Sbjct 219305 CTGCAATTTCCTTCATCTTGGTGAGGACCATAGAAGATATTTCCTCTGGGTGGAAGGAT- 219363 Query 518392 CTTGGATTCATTTTGATATGATA-CTTCAAAATATGGTTTATTA------CCAACATTAA 518444 || | |||| ||| || || ||| | | | || |||| | ||| | Sbjct 219364 -TTAGTTTCACCCTGAAATTGTACCTTGATCACA-GGCTTATCATTTGGTCCAGC---CG 219418 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 ||| |||||||||||| ||| ||||| ||| | | | ||||| | | ||| | Sbjct 219419 CAACAGTAAATGGCCAGTGTTTTATATCACTTTGGATGCAGGGATCATTGATCTTTCTCC 219478 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || |||| |||||||||||||| || || ||||| | ||| | |||| ||||| Sbjct 219479 CTATCAATCTTTTTGCATCAAAAACTGTGTTTTCAGGATTTCTAGCATCCTGATTTTTGG 219538 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | || || |||| || | || || || || | |||||| || |||||||| || | Sbjct 219539 CGGCGTCGCCAACCAATCGCTCCACATCAGTGAAGGCAACATAAGACGGAGTTGTACGGT 219598 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684 | ||||||||||| || |||||||| || | |||||| ||| || || ||||| Sbjct 219599 TGCCTTGATCATTGGCTATAATTTCTACAGTTTCATTTTTCCAAACGCCAACACATGAGT 219658 Query 518685 AAGTTGTTCCTAAATCAATACCAATAGCA 518713 |||| ||||| |||||||| ||||||||| Sbjct 219659 AAGTGGTTCCCAAATCAATCCCAATAGCA 219687 >seq14 Length=15907 Score = 154 bits (170), Expect = 1e-31 Identities = 203/281 (72%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||||||||||||||| || | | ||||| |||||| || ||| | |||| || | || Sbjct 11087 ATCAAAATCTTCACCGCCGAGGTGAGTATCTCCTGATGTCGCTATGACTTCAAATACACC 11028 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 | |||| | | || | |||||| || |||||||| | |||| | | | | Sbjct 11027 GTTGTCAATTGTAAGTAGGGAAACATCAAAAGTACCACCACCGAGATCATAGACCAAAAT 10968 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 ||| |||||| || | | || ||||||||||| |||| |||||| || || ||||| Sbjct 10967 ATTTTTTTCTTCATCCT---TATTGTCAAGACCATAAGCAATAGCAGCGGCTGTGGGTTC 10911 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| | || | || ||||| | |||||||||| ||||||||||| || ||||| | Sbjct 10910 ATTGAGTATACGTAATACATTCAAACCAGCAATTTGACCTGCATCTTTGGTAGCTTGGCG 10851 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | ||| ||||||||||||||||| || | |||||||| Sbjct 10850 CTGGGCATCATTAAAATATGCAGGAACTGTCACAACGGCAT 10810 >seq27 Length=144773 Score = 111 bits (122), Expect = 1e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||| | |||| ||||| || |||||||| ||||| || |||||||| Sbjct 103327 TTCTTCTCCAAACCAAAGGCAAGCGCAGCTGCCGTTGGTTCGTTAATTATCCTCAAAACT 103386 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | |||||| || || | || ||||| || || || ||||||||||||||||||||||| Sbjct 103387 TCAAGACCTGCGATCTTACCCGCATCCTTTGTCGCCTGTCTTTGTGAATCGTTAAAATAA 103446 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || || || || | | || | |||| | | ||| ||| |||| Sbjct 103447 GCGGGTACCGTTATCACTGCTTTTCTCACAGGTCTACCCAAGTGAGCTTCTGCTGTTTCC 103506 Query 518345 TTCATTTTACTTAAAA 518360 |||||||| ||||| Sbjct 103507 TTCATTTTTGATAAAA 103522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780818330889892