Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq73 152 6e-32 >seq73 Length=143992 Score = 152 bits (168), Expect = 6e-32 Identities = 571/886 (64%), Gaps = 22/886 (2%) Strand=Plus/Minus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 ||||| || || || ||||| || || || ||||| ||| |||||||| | || || Sbjct 51125 TGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCACAATCTC 51066 Query 47939 AGCA-CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTAC 47997 ||| |||| || | | | || |||||||| | || | ||||| | |||| Sbjct 51065 -GCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTAATTAC 51007 Query 47998 ATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATT 48057 | ||||||||||| | ||| |||| ||||| ||||| || || |||| | ||||| Sbjct 51006 AAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGATAGCAA 50947 Query 48058 TCCAAACAGTCCTAGC-----CTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTT 48112 ||||| || || || | | | | | || || | || || | Sbjct 50946 ACCAAAGGGTTTGCGCGGGAACTGTTTTGCGACCCATGCCTTTCGAC-----TCATAACT 50892 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 ||| ||||| || |||||||| || || | || | ||||| || ||| |||| || Sbjct 50891 AGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCATCTGG 50832 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 |||||||| | ||| | |||| | || || || |||| || | ||||| ||||| Sbjct 50831 GCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGGATCCA 50772 Query 48233 AAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291 | || ||| || || ||||||| ||| || || ||| || || || | Sbjct 50771 CAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCGTAGAT 50713 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 | || || || | ||||||||||||||||| |||| || || || | | |||| || Sbjct 50712 CTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGAACCTTTTC 50653 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 ||| ||||| ||||| | ||| | ||||||| || | | ||| | ||| || | Sbjct 50652 TTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAGCATAGGTA 50593 Query 48412 CAATACCATTTGATATACCATTGGTTCC-CGAAA-TATAACTTCCACTAGCTCTTATATT 48469 ||| ||||| || ||||| || || |||| ||| | | | || | ||| || Sbjct 50592 TAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTATGAACTGGAG--GCACGTATTTT 50535 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 |||| | |||||| || ||||| | ||| || || ||||| | ||||||| Sbjct 50534 GTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACATTGGGTAAGGGT 50475 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 ||| |||| || ||| |||||| | |||| | || || || ||||||||||| Sbjct 50474 GTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAGCTAGACATTTG 50415 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| |||||| || || || | ||| |||| || || ||||| |||||| || Sbjct 50414 AGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAATAATTTCTTGGA 50355 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTG--ATGTATACCTATAGAT 48707 | | || || || || || || ||| |||| ||||| |||||||| || Sbjct 50354 CATGTAATTGTAAGTCTCCATGGCACGATCAATAT--CATTGGAGTGTATACCGCAAGCA 50297 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 || | | | | || ||||| |||||| |||| || ||||| Sbjct 50296 ACTCTGACGAGAAGATGCTGAGGCCTTTCAGCAATCTTCCCATTTA 50251 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || || |||||||| || | || || | || || || |||||||| | ||| Sbjct 52134 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 52075 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || |||| ||| |||| ||||| || |||||||||| || || | ||| |||| Sbjct 52074 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 52015 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 | | || | ||| || || |||||| ||| ||||| || || || | ||| |||||| Sbjct 52014 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 51955 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATA 47197 || || | || || | ||| ||||||||||| ||||| || Sbjct 51954 ATGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTA 51911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108223838480