Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq58 219 3e-51 seq14 127 1e-23 seq45 122 6e-22 seq39 93.3 3e-13 >seq58 Length=597893 Score = 219 bits (242), Expect = 3e-51 Identities = 390/562 (69%), Gaps = 23/562 (4%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| ||||| |||||||| ||||| |||||| ||||| | |||||| |||||| | Sbjct 219687 TGCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAAC 219628 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||||| || |||||||| ||||| || | ||||| || || |||||| | || || Sbjct 219627 TGTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCAC 219568 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || | | |||| || || || ||| |||| | ||| ||||||| || Sbjct 219567 TGATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGAAATCCTGAAAA 219508 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || |||||||||| ||||||||||| || | || | ||||| || ||||| Sbjct 219507 CACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAGATCAATGATCCCTGCATCCAAAG 219448 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATAT-ATAGA-- 474624 |||||| || ||||| |||| || || | ||| |||| || ||| Sbjct 219447 TGATATAAAACACTGGCCATTTACTGT------TGCGGCTGG---ACCAAATGATAAGCC 219397 Query 474625 ----AGCAA--TACACG--CAGG-TGAAACTAAACAATTTTCACCGGAACAAATTTCTTC 474675 | ||| |||| |||| |||||||||| || || || |||| ||||| Sbjct 219396 TGTGATCAAGGTACAATTTCAGGGTGAAACTAAATCCTTCCACCCAGAGGAAATATCTTC 219337 Query 474676 AATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTG 474734 ||||| | |||| ||||| ||| || || ||| | ||| |||| | | || Sbjct 219336 TATGGTCCTCACCAAGATGAAGGAAATTGCAGAATCTTATTTGGGA-AAGACAATCTCTA 219278 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || ||||| || || |||||||| ||||||||||| || || ||||| || | Sbjct 219277 ATGCTGTTATCACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGACG 219218 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| || | |||||| | |||||||| ||||||||||| || |||||| Sbjct 219217 CTGGTACCATTGCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGCAA 219158 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| |||||| | || ||||| Sbjct 219157 TTGCCTATGGTATGGACAAGAA 219136 Score = 152 bits (168), Expect = 3e-31 Identities = 437/658 (66%), Gaps = 28/658 (4%) Strand=Plus/Minus Query 475695 TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTT 475754 |||||||| | || |||||||||||||| || | || || || ||| || ||| || Sbjct 218704 TCCATGAAGTGGTACTTGTAGGAGGTTCGACCCGTATCCCTAAGATAC-AGCAATTGATT 218646 Query 475755 CATCATATTTT-AATGGTAAAAAGTT----AAATGAAAGTGTAAATCCTGATGAAGCTGT 475809 | | |||| ||||| ||| | |||| || | || || || ||||| || Sbjct 218645 AAGGACTTTTTCAATGGCAAAGAACCCTGCAAATCAA----TTAACCCAGACGAAGCAGT 218590 Query 475810 TGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAA---CT 475866 || ||||| || ||||| || || || |||||| | || || || | || || | Sbjct 218589 AGCCTATGGCGCGGCTGTTCAGGCTGCAATTTTAACTGGCGAA-CAATCTAGCAAGGTCC 218531 Query 475867 AAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGG 475926 || || ||| | | || || |||||||| ||| |||| ||||| || | || || Sbjct 218530 AAGATTTACTGT--TACTAGATGTCACTCCACTGTCACTAGGACTTGAGACCGCCGGCGG 218473 Query 475927 GATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATT 475986 ||||||| || || |||||||||| ||||||| ||| || | ||| ||| Sbjct 218472 TGTTATGACCGTGCTGATACCCAGAAATACTACTATCCCCGCCAAGAAGGAACAAGAATT 218413 Query 475987 TTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAA 476046 | | || || |||| ||||| || | ||||| |||| ||||| ||| | Sbjct 218412 TACAACCAATGAAAATAACCAAACGGGGGTTATGATCCAGGTCTTCGAAGGAGAACG--- 218356 Query 476047 ATTCACTAA-AGATAATAACAA---ACTTGGAACTTTTAATCTTGAA-GGTATTCCTCCT 476101 ||| | | | | | ||||| ||| || | || || |||| || || |||||| Sbjct 218355 -TTCTATGACATGTGACAACAATTTACTAGGCAAATTCCAT-TTGACTGGCATACCTCCT 218298 Query 476102 GCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTT 476161 ||||| ||||||||||| || ||| |||| || ||||| || ||||| |||||||| | Sbjct 218297 GCTCCAAGAGGAGTTCCCCAGATTAAAGTCACCTTTGACATCGATGCCAATGGTATATTG 218238 Query 476162 AATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAAT 476221 | || ||||| || || || | |||| | || || ||||||| ||||| | Sbjct 218237 ACAGTGTCTGCTGCCGACAAGTCGACAGGAAAGACTGAACATGTAACTATAACAAATGAC 218178 Query 476222 CGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAA 476281 || ||| || | | || | ||| | | ||||||| |||||| | ||||| Sbjct 218177 AAGGGAAGACTTTCACAGCAAGACATTGATAGGATGGTTGCTGAAGCAGAGAAGTTTAGG 218118 Query 476282 GAAGCTGATAACAAGA-GAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTAT 476338 |||| |||| | |||| ||| || || | |||| | |||||||||||||| || ||| Sbjct 218117 GAAGATGATGAAAAGAAGAAGAGGTG-TGTTGAATCCAAGAATGAACTTGAGAACTAT 218061 >seq14 Length=15907 Score = 127 bits (140), Expect = 1e-23 Identities = 134/176 (76%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || ||||| ||||||||||||||| | || || ||||| || ||||||| Sbjct 10810 ATGCCGTTGTGACAGTTCCTGCATATTTTAATGATGCCCAGCGCCAAGCTACCAAAGATG 10869 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| ||| | ||||| |||||||| | |||||||| ||||| || || Sbjct 10870 CAGGTCAAATTGCTGGTTTGAATGTATTACGTATACTCAATGAACCCACAGCCGCTGCTA 10929 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGAT 474910 |||||||||||||||| || || || ||||| |||| |||| ||| |||| Sbjct 10930 TTGCTTATGGTCTTGACAATAA---GGATGAAGAAAAAAATATTTTGGTCTATGAT 10982 Score = 95.1 bits (104), Expect = 8e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 290823 CAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGAC 290882 |||||||||| | | | ||| ||||| |||||||| | || | |||||||| | || Sbjct 10944 CAAGACCATAAGCAATAGCAGCGGCTGTGGGTTCATTGAGTATACGTAATACATTCAAAC 10885 Query 290883 CTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGA 290942 | ||||||| | | |||| || || ||||| || |||||||||||||| ||||| | Sbjct 10884 CAGCAATTTGACCTGCATCTTTGGTAGCTTGGCGCTGGGCATCATTAAAATATGCAGGAA 10825 Query 290943 CTGTAATAACAGCTTTTTCCACTTTCT 290969 |||| | ||| || |||| ||| ||| Sbjct 10824 CTGTCACAACGGCATTTTTAACTGTCT 10798 >seq45 Length=276350 Score = 122 bits (134), Expect = 6e-22 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 480582 TCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAA 480641 ||||| || ||| || || | ||||| | | ||||| |||||||| ||||||||| Sbjct 45817 TCTTTTTGAATATTGTAGTCTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAA 45876 Query 480642 ATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCT 480701 || || |||||||||||||| |||||||| ||||| || |||||||| || ||| | Sbjct 45877 ATCAGTCGTTGTTGATCAGGTGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTT 45936 Query 480702 TCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 || ||||||||| || | | | || ||| || || |||||||| ||||| || || || Sbjct 45937 TCGATAGTATCACTGGGCTCTACTTCCAA-TGTGATGGTTTTACCCGTGAGTGTTTTCAC 45995 Query 480761 GAAAATTTG 480769 || ||||| Sbjct 45996 AAATATTTG 46004 Score = 122 bits (134), Expect = 6e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || | ||| |||||||||||||| || ||||||||||| || |||||||| |||||| Sbjct 157740 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 157799 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||||||||| || ||| ||||||||||||| | || |||||||| || Sbjct 157800 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 157859 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || || || || ||||| Sbjct 157860 GTTTTACCCGTAAGTGTTTTTACAAATATTTG 157891 >seq39 Length=443216 Score = 93.3 bits (102), Expect = 3e-13 Identities = 155/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 296066 TTGAGAGAATTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATT 296125 |||| |||| ||| |||||| ||||| || | || || || || ||||| ||| ||| Sbjct 195918 TTGAAAGAACTGGTAGATGGGTTGATTTTGACTCGGACTACAAGACGATGGACAAAGATT 195977 Query 296126 TTATGGAATCTGTTATTTGGTCATTTAAACAACTTTATGAAAAGGAAATGATTTTTGAAG 296185 |||||||| ||| ||| || |||||||| ||||| ||| | | | | | | Sbjct 195978 TTATGGAAAGTGTATGGTGGAGTTTCAAACAACTCTATGATAAGAATCTTGTCTATAAGA 196037 Query 296186 GTTATAAAGTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAA 296245 ||| || |||||||| || ||| || || ||||||| | ||| |||| ||||| | Sbjct 196038 GTTTCAAGGTTATGCCATACTCTCTTGCCTGTTCTACACCACTTTCTAATTTCGAGGCGA 196097 Query 296246 AACAAAATTATAAAGAGATTATTGATCCATCTGTTACTTGTTG 296288 | | ||||| ||| | | | ||||| || |||| |||||| Sbjct 196098 ATCTTAATTACAAAAATGTGGTAGATCCTTCGGTTA-TTGTTG 196139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268175682622136