Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq73 187 7e-42 seq77 134 4e-26 >seq73 Length=143992 Score = 187 bits (206), Expect = 7e-42 Identities = 492/748 (66%), Gaps = 11/748 (1%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 |||| |||||||| ||||| | ||| | ||| || || |||| |||||||| || Sbjct 51079 TATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTT 51020 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || || |||||||| |||||||||| ||||| || |||||||| || || || | Sbjct 51019 GACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGAT 50960 Query 155751 TCCAGAATCTTTAGCCAGAGGT----CACGGGCATTAATTTGCTTGTTGTATCTGCCTTC 155806 | | || | ||| ||| | |||| | | ||||| | || ||||| Sbjct 50959 TGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGTTTTGC--GACCCAT--GCCTTT 50904 Query 155807 CGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG 155866 ||||||||| | | || | || | ||||| || || | | ||||| Sbjct 50903 CGACTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCT 50844 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATAC 155926 |||| ||| ||||| | || | ||| ||| |||| | || | | ||| || | Sbjct 50843 ACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAG 50784 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 || ||| | |||||||| | |||||| ||| |||||||||| || || || Sbjct 50783 GTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTT 50724 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 || ||||| |||| |||||| |||||||| ||| |||||| || || || ||||| Sbjct 50723 TTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAA 50664 Query 156047 ACTACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 ||| || || || || || |||||| ||||| |||||||| | |||||| | | Sbjct 50663 TGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCT 50604 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 |||||||| ||||| ||||||||| ||||| || |||||||| | |||| || | Sbjct 50603 GAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTATGAACTGGAGGC 50544 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTC 156223 || | || || || || || || || |||| ||| ||| | || |||| Sbjct 50543 ACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACATTG 50484 Query 156224 CTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGA 156283 | | || | |||||||| |||||||||||| | || || || |||| Sbjct 50483 GGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAGCT 50424 Query 156284 ACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 | | |||||| | ||||||| |||||| ||||| || || || || ||||| | Sbjct 50423 AGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAATAA 50364 Query 156344 CTTATTAGACATATAATCGTATGTCTCC 156371 || || ||||| |||| ||| |||||| Sbjct 50363 TTTCTTGGACATGTAATTGTAAGTCTCC 50336 >seq77 Length=235547 Score = 134 bits (148), Expect = 4e-26 Identities = 307/455 (67%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || || || | || |||||||||||||| |||||| || | || || | Sbjct 218924 CTATCGAATCTTCCTGGTCGCACTAATGCTGGGTCTAGTATATCTGCACGATTAGTACCG 218865 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 |||| ||||| | | | | | ||||| |||||||| | ||||||||||| Sbjct 218864 GCCATCACAACTACACCTGATGATGATTTAAAGCCATCCATTTCTACCAAAATTTGATTT 218805 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG-AATCACCCGAATCGCTCCttttttt 289028 | ||| | |||||||||||| || ||||| | | || | | ||||| ||||| || Sbjct 218804 AATGTATTTTCCCTTTCATCGTTAGAACCACCGGCAAAGCCTCCTCTCGCT-CTTTTCTT 218746 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| ||||| ||||| || || | | || | ||||| ||| ||| | | Sbjct 218745 ACCAATGGCATCTATTTCATCAATAAAGATTATTGAAGGGGCATTTTTTCTAGCATTCTC 218686 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| || |||||||| | || | |||||| | | || | || || || | Sbjct 218685 AAATAGATCCCTTACACGACTGGGGCCGATACCAACGAATACCTCAATGAAATCTGATCC 218626 Query 289149 GGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || | ||||| || | ||||| || || || ||| | || ||||| || | Sbjct 218625 AGATA-TGGAGTAGAATGGAACTTGGGCTTCCCCGGCAACAGCCTTGGCAAGAAGCGTTT 218567 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC- 289266 |||| || ||||| ||||| | || | || ||||||| ||| || || || || Sbjct 218566 TACCCGTACCAGGAGGTCCACAAAGCAGTGCGCCTTTTGGTATTTTGGCGCC--CAAACT 218509 Query 289267 -TTATATTTCTCAGGGCTCTTTAAAAATTCTACAA 289300 ||| || | || || | || | ||| ||||||| Sbjct 218508 TTTAAATCTTTCTGGATTTTTGAGAAAATCTACAA 218474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816053671634