Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq58 405 4e-107 seq14 159 3e-33 seq27 120 2e-21 >seq58 Length=597893 Score = 405 bits (448), Expect = 4e-107 Identities = 1096/1649 (66%), Gaps = 50/1649 (3%) Strand=Plus/Plus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTT-TTCTTGTTATCTGCTTCTT 281318 ||| || || | |||||| || || |||||| || || || ||||| | ||| |||| Sbjct 218061 ATAGTTCTCAAGTTCATTCTTGGATTCAACA-CACCTCTTCTTCTTTTCATCATCTTCCC 218119 Query 281319 CAAA-TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 281377 ||| |||| | ||||| || ||| || ||||| | | | || | |||||| Sbjct 218120 TAAACTTCTCT-GCTTCAGCAACCATCCTATCAATGTCTTGCTGTGAAAGTCTTCCCTTG 218178 Query 281378 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 281437 | ||| || ||||| | || | | || ||| || || || || |||| ||| | Sbjct 218179 TCATTTGTTATAGTTACATGTTCAGTCTTTCCTGTCGACTTGTCGGCAGCAGACACTGTC 218238 Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497 | |||||||||||||| | ||||| ||||||| ||| || || || ||||| ||||| Sbjct 218239 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 218298 Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557 || || || || ||||| ||| | || || ||| || || || | ||| Sbjct 218299 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 218358 Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 || || ||||| | ||||| |||| | ||||| |||| | || ||||||||| | Sbjct 218359 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAAT--T 218416 Query 281618 CTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 281675 || | | || || || || || || ||||| || | |||||||| ||| | Sbjct 218417 CTTGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGC 218476 Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735 | || || || | || || || || ||||||||||| | || | | || ||| | | Sbjct 218477 CGGCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCT 218536 Query 281736 T--TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 281793 | | || ||| | ||| | ||| || || |||| ||| || ||||| || || || Sbjct 218537 TGCTAGATT-GTTCG-CCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGC 218594 Query 281794 TTCATCAGGATTAACAGTTTCATTTA----GTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 ||| || || |||| || |||| ||| ||| ||||||||||| | || | Sbjct 218595 TTCGTCTGGGTTAA----TTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCA 218650 Query 281850 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 ||| || |||||| ||||| | || ||||| || | ||| | |||||| | ||| Sbjct 218651 ATTGCTGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCT 218710 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAAC 281968 ||||||| | || ||| ||| ||||||| || ||| | || | | | ||| Sbjct 218711 TCTTATCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAA-AGTGTTTTTGAAC 218769 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028 | || | ||| || || |||||| | || ||||| | || | | || || || || Sbjct 218770 ATTTCGGCACAGAGCTCCTCGAATCTGGCCCTAGTGATGTTGCAACTGTAGTCGATGCCA 218829 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 || || | || || || ||||||| | || || || |||| | ||||||||| Sbjct 218830 TCAAATATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCA 218889 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT- 282147 ||||||||| ||| || ||||| ||||| || | || |||| || |||| | || Sbjct 218890 CGTTCACATTGTGTTCTAAGTCTACGTAATGCACGT-CT-ATTGGTTGAAATATTCTTCC 218947 Query 282148 ----ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 || |||| ||| || || || || || | | || | | || ||||| || | Sbjct 218948 CGCCATTCTTTCGCTTAAAGTCATCTACGCAAAAGTTGACCAATCTGTTGTCAAAGTCCT 219007 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 |||| ||||| | |||| ||| || || |||| | |||| |||||||| | || Sbjct 219008 CACCGCCCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAG 219067 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 |||| | ||||| || ||||| |||| ||| ||||| | ||||| |||| Sbjct 219068 TTAAAATTGATACATCGAAAGTGCCACCGCCCAAATCGAAAATCAACACATTTTTTTCAG 219127 Query 282324 T-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 || | | || || || | |||||| |||| || ||||||||||||||||| ||||| Sbjct 219128 AAGTACCT--TTCTTGTCCATACCATAGGCAATTGCGGCAGCAGTTGGTTCATTGATAAT 219185 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | || |||||| | |||||||| | || || || |||||||| |||| ||| ||||| Sbjct 219186 ACGCATAACATTTAACCCAGCAATGGTACCAGCGTCCTTAGTGGCCTGTCGTTGAGAATC 219245 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAAGCGC 282500 ||||||||| || || ||||| ||||| |||| | | | ||||| |||| ||||| Sbjct 219246 GTTAAAATAAGCGGGTACAGTGATAACAGCATTAGAGATTGTCTTTCCCAA-ATAAGATT 219304 Query 282501 TTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTG 282558 ||| ||| ||||| || | | | ||| || || |||| ||||| ||| | Sbjct 219305 CTGCAATTTCCTTCATCTTGGTGAGGACCATAGAAGATATTTCCTCTGGGTGGAAGGAT- 219363 Query 282559 CTTGGATTCATTTTGATATGATA-CTTCAAAATATGGTTTATTA------CCAACATTAA 282611 || | |||| ||| || || ||| | | | || |||| | ||| | Sbjct 219364 -TTAGTTTCACCCTGAAATTGTACCTTGATCACA-GGCTTATCATTTGGTCCAGC---CG 219418 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 ||| |||||||||| | ||| ||||| ||| | | | ||||| | | ||| | Sbjct 219419 CAACAGTAAATGGCCAGTGTTTTATATCACTTTGGATGCAGGGATCATTGATCTTTCTCC 219478 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 | || |||| |||||||||||||| || || ||||| ||| | |||| ||||| Sbjct 219479 CTATCAATCTTTTTGCATCAAAAACTGTGTTTTCAGGATTTCTAGCATCCTGATTTTTGG 219538 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 | || || |||| || | || || || || | |||||| || |||||||| || | Sbjct 219539 CGGCGTCGCCAACCAATCGCTCCACATCAGTGAAGGCAACATAAGACGGAGTTGTACGGT 219598 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 | ||||||||||| || |||||||| || | |||||| ||| || || ||||| Sbjct 219599 TGCCTTGATCATTGGCTATAATTTCTACAGTTTCATTTTTCCAAACGCCAACACATGAGT 219658 Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCA 282880 |||| ||||| |||||||| ||||||||| Sbjct 219659 AAGTGGTTCCCAAATCAATCCCAATAGCA 219687 >seq14 Length=15907 Score = 159 bits (176), Expect = 3e-33 Identities = 209/289 (72%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||||||||||||||| || | | ||||| |||||| || ||| | |||| || | || Sbjct 11087 ATCAAAATCTTCACCGCCGAGGTGAGTATCTCCTGATGTCGCTATGACTTCAAATACACC 11028 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 | |||| | | || | ||||||| || |||||||| | |||| | | | | Sbjct 11027 GTTGTCAATTGTAAGTAGGGAAACATCAAAAGTACCACCACCGAGATCATAGACCAAAAT 10968 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 ||| |||||| || | | || ||||||||||| |||| |||||| || || ||||| Sbjct 10967 ATTTTTTTCTTCATCCT---TATTGTCAAGACCATAAGCAATAGCAGCGGCTGTGGGTTC 10911 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 ||| | || | || ||||| | |||||||||| ||||||||||| || ||||| | Sbjct 10910 ATTGAGTATACGTAATACATTCAAACCAGCAATTTGACCTGCATCTTTGGTAGCTTGGCG 10851 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || | ||| ||||||||||||||||| || | |||||||| | | ||| Sbjct 10850 CTGGGCATCATTAAAATATGCAGGAACTGTCACAACGGCATTTTTAACT 10802 >seq27 Length=144773 Score = 120 bits (132), Expect = 2e-21 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||| | |||| ||||| || |||||||| ||||| || |||||||| Sbjct 103327 TTCTTCTCCAAACCAAAGGCAAGCGCAGCTGCCGTTGGTTCGTTAATTATCCTCAAAACT 103386 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | |||||| || || | || ||||| || || || ||||||||||||||||||||||| Sbjct 103387 TCAAGACCTGCGATCTTACCCGCATCCTTTGTCGCCTGTCTTTGTGAATCGTTAAAATAA 103446 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || || || || | | | || | | || | | ||| |||||||| Sbjct 103447 GCGGGTACCGTTATCACTGCTTTTCTCACAGGTCTACCCAAGTGAGCTTCTGCTGTTTCC 103506 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 |||||||| ||||| || | ||||| ||||||||||| ||| Sbjct 103507 TTCATTTTTGATAAAACAATAGCGCCTATTTGGGAAGGAGAATATTGTTTG 103557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740626374146532