Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq73 215 7e-51 seq39 87.8 2e-12 >seq73 Length=143992 Score = 215 bits (238), Expect = 7e-51 Identities = 667/1022 (65%), Gaps = 24/1022 (2%) Strand=Plus/Minus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||||||||| ||||| | ||| | || | || || || || || ||||| Sbjct 51385 TAAATTGTTTCAAAAATTCTGACATTCAATTCACGGGCCTCCTGAGATTCAAAAGGATAG 51326 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | ||| || || | ||| || ||||||||||| || | ||| || || ||||||||| Sbjct 51325 CGCATAAGCATGAAAGTATCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTC 51266 Query 69136 TTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 || || ||| |||||| || |||| ||| |||||||| ||||||||| |||| | | Sbjct 51265 TTGTTAGAATATTCAGCCTCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAA 51206 Query 69196 TTTCGGACTACTACTTT--AACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA---- 69249 || | || || || || | || | ||| |||||| || | Sbjct 51205 TTGAAAGTAAGTATCTTGCAAGCAGAA--TGTAATAACTTAAAGTCAAAT--TCGAGAGT 51150 Query 69250 TCTA----TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATT 69305 | || | ||| || | || ||||| || || || ||||| ||||| || ||||| Sbjct 51149 TTTAGTGTTTACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATT 51090 Query 69306 AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 || | || |||||| | ||||| |||| || ||| | || ||||| || | || Sbjct 51089 AGGAGATGTATATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTT 51030 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 | |||||| ||| | ||||| ||||||||||| | || | ||||| || ||||| Sbjct 51029 CTTCTGATTTGACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTC 50970 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG 69485 ||| || |||| | |||| ||||| | || | | || ||| || Sbjct 50969 AATTTGCGATTGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACT---GTTTTGCGACC 50913 Query 69486 CTTCTCTTTT---TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATC 69542 | | |||| ||||| || |||| ||| ||||| ||||||||||| | ||| Sbjct 50912 CATGCCTTTCGACTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATC 50853 Query 69543 CAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTT 69602 | ||| ||| |||| ||| |||||||| | ||| |||| | | | ||| | ||| Sbjct 50852 TAGTCCTCTACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTT 50793 Query 69603 CATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCAT 69661 ||| || || || || ||||| | || ||| || | || || | || || || Sbjct 50792 CATGAAAAGGTCTGGGATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTG 50734 Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721 || |||||| ||||| || || || | |||||||| ||||||||| ||||| | Sbjct 50733 AACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGT 50674 Query 69722 ATATCGCCA-TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 | || || | ||| || || ||| ||||||||||| | || | ||||| | | Sbjct 50673 AGATGGCAAATGAA-CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCA 50615 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || | | ||| ||||| || ||||| ||||| || | |||||||| || ||| || Sbjct 50614 TTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTAT 50555 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 | || || || || || | || |||||| |||||||| | ||| || Sbjct 50554 GAACTGGAGGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATG 50495 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 || ||||| | | | |||||| | ||||| || |||||| | || | |||| Sbjct 50494 AGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGA 50435 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || || ||||||||||||||| || | ||||||| | || || | ||| |||| ||| Sbjct 50434 AGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCG 50375 Query 70021 TG 70022 || Sbjct 50374 TG 50373 >seq39 Length=443216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 ||||| ||||| || || |||| |||||| ||||| || || || ||||| || || Sbjct 41503 TGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAAAGGTTAGCCCGGGCATGAGCCCG 41562 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGC 39750 || ||||| |||||||||||||| ||| ||| | || ||||| || || ||||| ||||| Sbjct 41563 CGTTTTTTCAGCCAAAATATGGC-GCAGAAGCTACCCGAAAATAAAATTCCTTCCACTGC 41621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908095918480