Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650065.1_202016-05-23] 82 sequences; 6,346,114 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq73 170 3e-37 seq39 87.8 2e-12 >seq73 Length=143992 Score = 170 bits (188), Expect = 3e-37 Identities = 682/1062 (64%), Gaps = 20/1062 (2%) Strand=Plus/Minus Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483 ||||||||||| ||||| | ||| | || | || || | ||||| ||||| Sbjct 51385 TAAATTGTTTCAAAAATTCTGACATTCAATTCACGGGCCTCCTGAGATTCAAAAGGATAG 51326 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543 | | ||| || || | ||| ||||||||||||||||| | ||| || || ||||||||| Sbjct 51325 CGCATAAGCATGAAAGTATCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTC 51266 Query 77544 TTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGA 77603 || || ||| || ||| || |||| ||| |||||||| |||||||||| |||| | | Sbjct 51265 TTGTTAGAATATTCAGCCTCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAA 51206 Query 77604 TTTCTAACAACTA-CTT-TAACCACGTCCT--TTAGTTTAAG--AAAATCAAATCTTCCA 77657 || | || || ||| || || | | | || ||| ||| || | || | Sbjct 51205 TTGAAAGTAAGTATCTTGCAAGCAGAATGTAATAACTTAAAGTCAAATTCGAGAGTTTTA 51146 Query 77658 TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | ||| || | ||| |||| || || || ||||| ||||| || ||||||| Sbjct 51145 GTGTTTACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGA 51086 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 | |||||| | |||||| |||| || ||| | || ||||| || | || | Sbjct 51085 GATGTATATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTC 51026 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 || || ||| | ||| || | |||||| || | || | ||||| || |||||||| Sbjct 51025 TGATTTGACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATT 50966 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCT- 77896 || |||| | |||| ||| | | | || | | |||| | | | Sbjct 50965 TGCGATTGTAAGATAGCAAACCAAAGGGTTTGCGC---GGGAACTGTTTTGCGACCCATG 50909 Query 77897 -CTCTC-TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 || || ||||| ||| |||| ||||||||| ||||||||||| | ||| | | Sbjct 50908 CCTTTCGACTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGT 50849 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || || |||| |||||||||||| | ||||| ||| | | ||| | |||||| Sbjct 50848 CCTCTACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATG 50789 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || || || || ||||| | ||| || | || | | || || || || Sbjct 50788 AAAAGGTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCA 50729 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || ||| ||||| || || || | |||||||| ||||||||| ||||| || || Sbjct 50728 TGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATG 50669 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | || || ||| ||||||||||| | ||| | || || | ||| | Sbjct 50668 GCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAAT 50609 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 | ||| | ||| || ||||| || || || |||||||| || ||| || | | Sbjct 50608 ATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAA 50552 Query 78255 CT---TGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 || || || || || || | || ||||| |||||||| ||||| || || Sbjct 50551 CTGGAGGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGT 50492 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || | | | || || | ||||| ||| |||||| | || | |||||| Sbjct 50491 GCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGG 50432 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 || ||||||||||||||| || |||||| | || || | ||| |||| || || Sbjct 50431 AAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGG 50372 Query 78432 GTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGC 78472 |||| |||| | || | ||| |||||| || || || || Sbjct 50371 ATAAATAATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 50331 >seq39 Length=443216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| ||||| |||| || || ||||| || || || |||| |||||| |||| Sbjct 41480 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 41539 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCA 48251 | || || |||||||| || || |||||||| |||||||||| || ||| ||| | || Sbjct 41540 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATA-TGGCGCAGAAGCTACCC 41598 Query 48252 GAAAAGAATATGCCTTCTACGGCCG 48276 ||||| || || ||||| || |||| Sbjct 41599 GAAAATAAAATTCCTTCCACTGCCG 41623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668087964480