Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq183 100 2e-16 seq237 91.5 1e-13 >seq183 Length=66479 Score = 100 bits (110), Expect = 2e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 28949 TAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGA 29008 |||| |||| | ||||||||||| | |||||| | ||||| |||||||| || || Sbjct 26824 TAATTGTGTCACTATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGA 26765 Query 29009 AACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGT 29068 | || ||| || || | | || ||||| || ||| ||||| || || | Sbjct 26764 AGTAGAGCCCAGTGATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAAT 26705 Query 29069 GCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTAT 29128 || ||||||||| |||| || ||||| || || ||||| ||||| | ||| | Sbjct 26704 TCCACCTGATCAACAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCT 26645 Query 29129 GGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | | || ||||||||||| || || |||||| | || ||||||| ||||||| || || Sbjct 26644 GTCAGACTACAATATTCAAAAAGAGTCTACTTTGCATTTGGTGTTGAGATTACGCGGTGG 26585 >seq237 Length=221212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 ||||||||||||||||| | |||||| | ||||| |||||||| ||| || |||| Sbjct 75923 GTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAA 75864 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 || || || | | || | ||| || ||| || || || || | ||| Sbjct 75863 CCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCC 75804 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCG 29133 ||||||||| |||| || ||||| || |||||| |||| || || | ||| | | | Sbjct 75803 GATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAG 75746 Query 29134 ATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 |||| || || || |||||||| || |||||| | |||||| Sbjct 75745 ATTATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74094 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74035 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74034 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 73975 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 73974 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 73917 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 73916 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 73881 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74322 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74263 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74262 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74203 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 74202 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74145 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 74144 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74109 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74550 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74491 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74490 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74431 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 74430 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74373 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 74372 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74337 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74778 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74719 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74718 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74659 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 74658 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74601 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 74600 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74565 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75006 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74947 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74946 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74887 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 74886 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74829 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 74828 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74793 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75234 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75175 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 75174 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75115 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 75114 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75057 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 75056 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75021 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75462 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75403 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 75402 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75343 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 75342 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75285 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 75284 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75249 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75690 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75631 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 75630 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75571 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGA--TTCCAAAACTATGGCCGATTAC 29138 |||| |||| || ||||| || |||||| |||| || || | ||| | | ||||| Sbjct 75570 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75513 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || |||||||| || |||||| | |||||| Sbjct 75512 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428334694913750