Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq237 100 2e-16 >seq237 Length=221212 Score = 100 bits (110), Expect = 2e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 25029 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 25088 ||||||||||||||||| | |||||| | ||||| |||||||| ||| || |||| Sbjct 75923 GTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAA 75864 Query 25089 CCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 25148 || || || | | || | ||| || ||| || || || || | ||| Sbjct 75863 CCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCC 75804 Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCG 25206 ||||||||| |||| || ||||| || ||||||||||| || || | ||| | | | Sbjct 75803 GATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAG 75746 Query 25207 ATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 |||| || || ||||||||||| || |||||| | |||||| Sbjct 75745 ATTATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74094 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74035 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74034 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 73975 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 73974 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 73917 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 73916 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 73881 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74322 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74263 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74262 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74203 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 74202 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74145 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 74144 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74550 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74491 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74490 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74431 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 74430 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74373 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 74372 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74337 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 74778 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74719 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74718 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74659 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 74658 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74601 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 74600 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75006 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74947 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 74946 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74887 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 74886 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74829 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 74828 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 74793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75234 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75175 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 75174 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75115 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 75114 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75057 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 75056 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75462 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75403 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 75402 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75343 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 75342 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75285 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 75284 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | |||||| | ||||| |||||||| ||| || |||||| Sbjct 75690 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75631 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| || ||| || || || || | ||| ||||| Sbjct 75630 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75571 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCCAAAACTATGGCCGATTAC 25211 |||| |||| || ||||| || ||||||||||| || || | ||| | | ||||| Sbjct 75570 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75513 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||||||||||| || |||||| | |||||| Sbjct 75512 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTA 75477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410795548353500