Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq241 134 1e-26 seq183 122 8e-23 seq237 93.3 4e-14 >seq241 Length=536494 Score = 134 bits (148), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| |||| | || ||||||| |||||||||||||| | || ||| Sbjct 151193 TCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCAGTT 151134 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || ||| ||||| ||| | |||||||| || || |||| | | || || || | Sbjct 151133 TTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGCTGT 151074 Query 132999 GCGACAAATAAAT--TCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || ||||| ||||||||||| ||| || ||||| | | || ||||| |||| Sbjct 151073 TC--CATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCCA 151016 Query 133057 TGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 ||| ||||| ||| ||||||||||||| | || ||| | |||||||| | | | Sbjct 151015 TGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCTT 150956 Query 133117 GTGGTATTTCGTCAATGTTCTG 133138 |||||||||| || ||||| || Sbjct 150955 GTGGTATTTCATCGATGTTTTG 150934 >seq183 Length=66479 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||||||||||||||| || | ||||||||||||||||| ||||| || | Sbjct 26585 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 26644 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| || || || || || ||||| | || || || || ||||| || || Sbjct 26645 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 26704 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| || ||| || ||||| | ||||| || || || ||| || Sbjct 26705 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 26764 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || || ||||| ||||| || ||||| Sbjct 26765 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 26811 >seq237 Length=221212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 73879 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 73936 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 73937 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 73996 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 73997 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 74056 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 74057 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74093 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 74107 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 74164 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 74165 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 74224 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 74225 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 74284 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 74285 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74321 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 74335 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 74392 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 74393 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 74452 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 74453 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 74512 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 74513 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 74563 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 74620 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 74621 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 74680 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 74681 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 74740 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 74741 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74777 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 74791 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 74848 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 74849 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 74908 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 74909 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 74968 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 74969 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75005 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 75019 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 75076 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 75077 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 75136 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 75137 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 75196 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 75197 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75233 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 75247 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 75304 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 75305 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 75364 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 75365 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 75424 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 75425 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75461 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 75475 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 75532 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 75533 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 75592 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 75593 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 75652 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 75653 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75689 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 75703 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 75760 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 75761 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 75820 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 75821 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 75880 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 75881 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829078173000