Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq237 111 1e-19 seq183 96.9 3e-15 >seq237 Length=221212 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 75714 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 75773 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 75774 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 75833 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 75834 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 75893 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTA 18330 | |||||||||||| ||||||||||||| Sbjct 75894 AAGTGTTTTTACAAATATTTGCATTTTTA 75922 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 73890 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 73949 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 73950 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 74009 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 74010 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 74069 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 74070 AAGTGTTTTTACAAATATTTGCATT 74094 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 74118 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 74177 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 74178 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 74237 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 74238 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 74297 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 74298 AAGTGTTTTTACAAATATTTGCATT 74322 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 74346 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 74405 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 74406 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 74465 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 74466 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 74525 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 74526 AAGTGTTTTTACAAATATTTGCATT 74550 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 74574 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 74633 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 74634 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 74693 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 74694 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 74753 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 74754 AAGTGTTTTTACAAATATTTGCATT 74778 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 74802 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 74861 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 74862 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 74921 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 74922 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 74981 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 74982 AAGTGTTTTTACAAATATTTGCATT 75006 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 75030 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 75089 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 75090 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 75149 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 75150 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 75209 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 75210 AAGTGTTTTTACAAATATTTGCATT 75234 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 75258 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 75317 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 75318 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 75377 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 75378 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 75437 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 75438 AAGTGTTTTTACAAATATTTGCATT 75462 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 75486 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 75545 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 75546 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 75605 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 75606 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 75665 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||| ||||||||| Sbjct 75666 AAGTGTTTTTACAAATATTTGCATT 75690 >seq183 Length=66479 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| ||| | |||| || | || || ||||||||||| |||||||| | Sbjct 26584 TCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGA 26643 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||| | ||| || || ||| | || |||| ||||||||| || Sbjct 26644 CAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGG 26703 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| ||| | ||| || | | | | ||| |||| |||||| Sbjct 26704 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 26763 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || || | |||||| ||||| |||||||| Sbjct 26764 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 26811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342844186250