Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq241 95.1 1e-14 seq237 95.1 1e-14 seq236 95.1 1e-14 seq231 95.1 1e-14 seq180 95.1 1e-14 >seq241 Length=536494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 286/434 (66%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || |||||||||| ||||| | || || |||| |||||| | |||||| | || Sbjct 151196 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 151137 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || || || ||||||| | ||||| || || | ||| || |||| | ||| Sbjct 151136 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 151077 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 |||||||| | || | ||| ||| ||| || || || || || |||||||| ||| Sbjct 151076 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 151017 Query 22286 ATATTTATCAATG--TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 || | || | | | | | || | ||||||||||| |||||||| | | | | || Sbjct 151016 ATGTCAATTATCGCCTTCTGTTTGA--TCTCCCATACGGTTTTGTACAGATTCTTTAGCT 150959 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT---TT 22400 || ||||| ||||| | || | || ||| | || | || || || || Sbjct 150958 CTTGTGGTATTTCATCGATGTTTTGTAAACTTCCATTA-TATGCA--ATTAATTTTTGTT 150902 Query 22401 TAATCGTATCGTTCCACA-AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACC 22459 | || || ||||| | | || || | |||||| || | | ||| | || || Sbjct 150901 TCATTTGGTCATTCCAGAGATCCAATTG-AACCAAATCATTCAATAAATGGGGATTTACA 150843 Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || ||| ||||| || | |||||| || | ||||| ||| | ||| | ||||| ||| Sbjct 150842 ACGAAAAATTCGCCAGAAAGGACGCGACGATAATAAATATTGCAAGTGTAAGGTTCAAAA 150783 Query 22520 GATTCATTGTTTCC 22533 ||||| ||||||| Sbjct 150782 GATTCGCTGTTTCC 150769 >seq237 Length=221212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 75921 AAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACC 75862 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || | | | |||| || || | || |||||||| || | || ||||| Sbjct 75861 TAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGA 75802 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGAT 31366 || || || ||||| || ||||| ||||| ||||| ||| || ||| | || || Sbjct 75801 TCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--AT 75744 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 75743 TATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 75691 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 74093 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74034 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 74033 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 73974 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 73973 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 73916 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 73915 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 73867 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 74321 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74262 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 74261 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74202 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 74201 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 74144 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 74143 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 74095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 74549 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74490 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 74489 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74430 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 74429 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 74372 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 74371 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 74323 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 74777 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74718 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 74717 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74658 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 74657 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 74600 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 74599 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 74551 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 75005 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74946 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 74945 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74886 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 74885 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 74828 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 74827 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 74779 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 75233 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 75174 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 75173 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 75114 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 75113 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 75056 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 75055 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 75007 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 75461 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 75402 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 75401 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 75342 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 75341 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 75284 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 75283 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 75235 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || || || ||||| || ||| | || || ||||| Sbjct 75689 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 75630 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || |||||||| || | || ||||| || Sbjct 75629 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 75570 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || || ||||| || ||||| ||||| ||||| ||| || ||| | || |||||| Sbjct 75569 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTATA 75512 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| ||||| |||||||| ||||| | || | || ||||| || || Sbjct 75511 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 75463 >seq236 Length=138068 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 57990 GCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACG 58048 || || ||||| || || |||||||| ||||| |||| || |||||||| |||| ||||| Sbjct 115493 GCAGTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCA-TATTTTGGCTGAAAAAACG 115435 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 ||| || |||||||| || || ||| |||||| | || || | ||||||||||| || Sbjct 115434 CGGGCTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCAGGGACGAGGGTCTACA 115375 Query 58109 TACTGATTTTG 58119 | || |||| Sbjct 115374 CGCCGAGTTTG 115364 >seq231 Length=443877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 57990 GCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACG 58048 || || ||||| || || |||||||| ||||| |||| || |||||||| |||| ||||| Sbjct 402260 GCAGTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCA-TATTTTGGCTGAAAAAACG 402318 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 ||| || |||||||| || || ||| |||||| | || || | ||||||||||| || Sbjct 402319 CGGGCTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCAGGGACGAGGGTCTACA 402378 Query 58109 TACTGATTTTG 58119 | || |||| Sbjct 402379 CGCCGAGTTTG 402389 >seq180 Length=127670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 57990 GCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACG 58048 || || ||||| || || |||||||| ||||| |||| || |||||||| |||| ||||| Sbjct 22576 GCAGTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCA-TATTTTGGCTGAAAAAACG 22634 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 ||| || |||||||| || || ||| |||||| | || || | ||||||||||| || Sbjct 22635 CGGGCTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCAGGGACGAGGGTCTACA 22694 Query 58109 TACTGATTTTG 58119 | || |||| Sbjct 22695 CGCCGAGTTTG 22705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765006980000