Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq241 168 8e-37 seq236 98.7 1e-15 seq231 98.7 1e-15 seq180 98.7 1e-15 >seq241 Length=536494 Score = 168 bits (186), Expect = 8e-37 Identities = 692/1074 (64%), Gaps = 44/1074 (4%) Strand=Plus/Minus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||| |||||||| || | ||| | || | || ||| | ||||| ||||| Sbjct 150447 TAAATTGTTTCAAAAATTCTGACATTCAATTCACGGGCCTCCTGAGATTCAAAAGGATAG 150388 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | || || || | || |||||||| ||||| || | ||| || || ||||||||| Sbjct 150387 CGCATAAGCATGAAAGTATCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTC 150328 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 || ||||| |||||| || |||| ||| |||||||| ||||||||| |||| | | Sbjct 150327 TTGTTAGAATATTCAGCCTCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAA 150268 Query 62868 TTTCTGACAATTACTTTG--ACCACATCCT--TCAGTTTGAGAAAATCAAATCGCCCA-- 62921 || || || ||| | || | | | | || ||| |||||| | Sbjct 150267 TTGAAAGTAAGTATCTTGCAAGCAGAATGTAATAACTT----AAAGTCAAATTCGAGAGT 150212 Query 62922 TCTA----TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATT 62977 | || ||||| || | |||||| | || || || |||||||| || || ||||| Sbjct 150211 TTTAGTGTTTACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATT 150152 Query 62978 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATT 63037 || | | |||||| | ||||| ||| | || ||| |||| ||||| |||| || Sbjct 150151 AGGAGATGTATATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTT 150092 Query 63038 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63097 | ||||| ||| | ||||| || ||||| || | ||| | ||||| || ||||| Sbjct 150091 CTTCTGATTTGACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTC 150032 Query 63098 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 63157 ||| || |||| || || || ||| | | | | || | | | |||| | Sbjct 150031 AATTTGCGATTGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACTGT---TTTGCGAC- 149976 Query 63158 CCTTTCTCTTTCGT---ATAG--AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63212 || | | |||||| ||| ||| || ||| ||| || || ||||||||||| | Sbjct 149975 CCATGC-CTTTCGACTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGA 149917 Query 63213 TCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63272 || | || ||| ||||| || |||||||| | ||| | | | | | | | || | | Sbjct 149916 TCTAGTCCTCTACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTT 149857 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTC 63331 ||||| || || || || ||||| | || ||| || | || || | || ||||| Sbjct 149856 TTCATGAAAAGGTCTGGGATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTC 149798 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63391 || || ||| ||||| ||||| | | |||||||| |||||| || || | Sbjct 149797 TGAACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAG 149738 Query 63392 GTATATGGCCATAACTCCAGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCG 63446 ||| ||||| || | | || ||| ||| ||||||||||| | || | ||| Sbjct 149737 GTAGATGGC---AAATGAA--CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCA 149683 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 || | ||| | | ||| | ||| || ||||| || || || ||||| || ||| Sbjct 149682 GTATCATTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGA 149623 Query 63507 ATATAGCCTCCACTGG---CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63563 || || | ||||| |||| || || |||| || |||||| || ||||| | Sbjct 149622 ATGTA---TGAACTGGAGGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTC 149566 Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623 ||| || | ||| ||| | | | |||||| | || || || |||||| | Sbjct 149565 TTACTAATGAGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTA 149506 Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683 || | ||| || || |||||||||||||| || ||||||| | || || | || Sbjct 149505 ATATCAAGAAGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTG 149446 Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC 63736 |||| ||||| |||| |||| | || | ||| |||||| ||||| || || Sbjct 149445 GGAGTGGCGTGGATAAATAATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 149393 >seq236 Length=138068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| ||||| | || ||| ||| ||||||||||| || |||| |||||| |||| Sbjct 115352 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 115411 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || |||||||| || || || ||||| ||||||||||||| ||| || | Sbjct 115412 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGGCGCAGAAGCTACCCG 115471 Query 33694 AAAAGAAGATTCCTTCTACTGC 33715 |||| || |||||||| ||||| Sbjct 115472 AAAATAAAATTCCTTCCACTGC 115493 >seq231 Length=443877 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| ||||| | || ||| ||| ||||||||||| || |||| |||||| |||| Sbjct 402401 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 402342 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || |||||||| || || || ||||| ||||||||||||| ||| || | Sbjct 402341 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGGCGCAGAAGCTACCCG 402282 Query 33694 AAAAGAAGATTCCTTCTACTGC 33715 |||| || |||||||| ||||| Sbjct 402281 AAAATAAAATTCCTTCCACTGC 402260 >seq180 Length=127670 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| ||||| | || ||| ||| ||||||||||| || |||| |||||| |||| Sbjct 22717 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 22658 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || |||||||| || || || ||||| ||||||||||||| ||| || | Sbjct 22657 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGGCGCAGAAGCTACCCG 22598 Query 33694 AAAAGAAGATTCCTTCTACTGC 33715 |||| || |||||||| ||||| Sbjct 22597 AAAATAAAATTCCTTCCACTGC 22576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815631820000