Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq237 109 5e-19 seq183 102 8e-17 >seq237 Length=221212 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 73882 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 73939 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 73940 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 73999 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 74000 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74058 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 74059 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74093 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 74110 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74167 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74168 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74227 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 74228 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74286 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 74287 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74321 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 74338 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74395 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74396 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74455 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 74456 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74514 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 74515 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74549 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 74566 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74623 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74624 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74683 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 74684 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74742 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 74743 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74777 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 74794 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74851 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74852 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74911 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 74912 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74970 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 74971 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75005 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 75022 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75079 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75080 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75139 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 75140 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75198 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 75199 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75233 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 75250 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75307 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75308 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75367 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 75368 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75426 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 75427 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75461 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 75478 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75535 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75536 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75595 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 75596 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75654 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 75655 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75689 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GT 139610 || |||||||||| ||| || || ||||| |||||||||| || | ||| ||| || Sbjct 75706 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75763 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75764 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75823 Query 139671 CGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | |||| | ||| | || || | || |||||||||| ||| | Sbjct 75824 C-TTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75882 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | |||||||| ||||||||||| Sbjct 75883 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75917 >seq183 Length=66479 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| | ||| || || || | ||||||||||||||||| || || || | Sbjct 26585 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 26644 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || ||||||||| | ||||| ||||| ||||| || || Sbjct 26645 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 26704 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | ||| | | ||| | || || ||||||| || Sbjct 26705 ATTCCCTCCTTATC-CTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 26763 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAG 139766 || | || | || || || || | ||||| || ||||||||||||| Sbjct 26764 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATAG 26813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062449800000