Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq237 104 2e-17 seq183 96.9 3e-15 >seq237 Length=221212 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 75691 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75750 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 75751 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75810 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 75811 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75870 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | ||||| ||||| || || || ||||| ||||| ||||||||||| Sbjct 75871 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTT 75920 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 73867 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 73926 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 73927 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 73986 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 73987 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74046 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 74047 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74094 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 74095 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74154 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 74155 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74214 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 74215 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74274 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 74275 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74322 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 74323 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74382 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 74383 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74442 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 74443 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74502 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 74503 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74550 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 74551 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74610 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 74611 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74670 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 74671 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74730 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 74731 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74778 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 74779 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74838 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 74839 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74898 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 74899 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74958 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 74959 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75006 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 75007 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75066 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 75067 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75126 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 75127 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75186 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 75187 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75234 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 75235 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75294 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 75295 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75354 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 75355 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75414 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 75415 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75462 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||||||| || || | || |||||||| | || ||||| || Sbjct 75463 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75522 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||||||||| || |||||||| | ||| |||||||||| || Sbjct 75523 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75582 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| | || || | ||| || || | || || || Sbjct 75583 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75642 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 75643 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75690 >seq183 Length=66479 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42879 GTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATC 42938 ||| || || || | ||| ||||||||||| | ||| ||| ||||| | |||||| || Sbjct 26581 GTCTCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTC 26640 Query 42939 GGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGC 42998 |||| || || |||| || | ||| || || |||||||||| ||| |||||||| | Sbjct 26641 TGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGG 26700 Query 42999 CGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT 43057 || | || || || || ||| ||| | || || | | | || || | | || Sbjct 26701 TGGAATTCCCTCCTTATC-CTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCT 26759 Query 43058 CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || | || || ||||| || || || ||||||||||| |||||||| Sbjct 26760 CTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 26811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368438014500