Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq183 111 2e-19 seq237 105 7e-18 >seq183 Length=66479 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| | ||| || ||||| | ||||| |||||||| || ||||| || | Sbjct 26585 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 26644 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| ||||||||| | ||||| ||||| ||||| || || Sbjct 26645 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 26704 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | ||| | || || |||| |||||| Sbjct 26705 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 26764 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAG 143186 || | || | || || || || | |||||| || ||||||||||||| Sbjct 26765 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATAG 26813 >seq237 Length=221212 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 73882 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 73939 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 73940 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 73999 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 74000 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74059 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 74060 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74093 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 74110 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74167 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74168 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74227 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 74228 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74287 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 74288 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74321 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 74338 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74395 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74396 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74455 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 74456 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74515 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 74516 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74549 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 74566 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74623 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74624 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74683 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 74684 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74743 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 74744 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74777 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 74794 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 74851 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 74852 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 74911 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 74912 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74971 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 74972 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75005 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 75022 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75079 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75080 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75139 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 75140 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75199 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 75200 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75233 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 75250 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75307 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75308 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75367 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 75368 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75427 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 75428 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75461 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 75478 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75535 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75536 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75595 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 75596 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75655 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 75656 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75689 Score = 105 bits (116), Expect = 7e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GT 143030 || ||||| |||| || ||||| ||||||||||| |||| || | ||| ||| || Sbjct 75706 AACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGT 75763 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 | || | |||||| |||||| | || || ||||| |||||||| || || || || |||| Sbjct 75764 CCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGT 75823 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | ||| || |||| | ||| | || || | ||||| || |||| || | | Sbjct 75824 CTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75883 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || || | ||||||||| ||||||||||| Sbjct 75884 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012815580000