Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq237 114 1e-20 >seq237 Length=221212 Score = 114 bits (126), Expect = 1e-20 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 75689 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 75748 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 75749 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 75806 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 75807 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 75866 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTA 20213 | || | ||| |||||||| || || | ||||| ||||| ||||||||||||| Sbjct 75867 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTTTA 75922 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 74093 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 74152 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 74153 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 74210 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 74211 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 74270 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 74271 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74322 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 74321 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 74380 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 74381 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 74438 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 74439 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 74498 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 74499 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74550 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 74549 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 74608 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 74609 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 74666 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 74667 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 74726 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 74727 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74778 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 74777 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 74836 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 74837 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 74894 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 74895 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 74954 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 74955 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75006 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 75005 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 75064 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 75065 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 75122 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 75123 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 75182 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 75183 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75234 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 75233 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 75292 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 75293 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 75350 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 75351 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 75410 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 75411 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75462 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 75461 TTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG 75520 Query 20040 CCATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| Sbjct 75521 --AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGG 75578 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | || || ||||| ||| || || || | ||| || ||| | |||||| Sbjct 75579 GGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTC 75638 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 75639 CACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75690 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| |||| | ||| ||||| || || || || ||||| ||||||||||| ||||| Sbjct 73866 TCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTG- 73924 Query 20041 CATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | ||| | || || ||||||||||| || ||| |||| || | ||||||||| | Sbjct 73925 -AAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGG 73983 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | || || ||||| ||| || || || | ||| || ||| | ||||||| Sbjct 73984 GGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCC 74043 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||| |||||||| || || | ||||| ||||| ||||||||| Sbjct 74044 ACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419585921570250