Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq237 138 1e-27 seq183 114 1e-20 >seq237 Length=221212 Score = 138 bits (152), Expect = 1e-27 Identities = 194/269 (72%), Gaps = 5/269 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 75657 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 75716 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 75717 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 75774 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 75775 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 75834 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 75835 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 75894 Query 94985 AGAGTTTTCACAAAGATCTGCATGCTTAC 95013 || ||||| ||||| || ||||| |||| Sbjct 75895 AGTGTTTTTACAAATATTTGCATTTTTAC 75923 Score = 136 bits (150), Expect = 4e-27 Identities = 190/263 (72%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 74061 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 74120 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 74121 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 74178 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 74179 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 74238 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 74239 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 74298 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||| Sbjct 74299 AGTGTTTTTACAAATATTTGCAT 74321 Score = 136 bits (150), Expect = 4e-27 Identities = 190/263 (72%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 74289 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 74348 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 74349 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 74406 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 74407 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 74466 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 74467 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 74526 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||| Sbjct 74527 AGTGTTTTTACAAATATTTGCAT 74549 Score = 136 bits (150), Expect = 4e-27 Identities = 190/263 (72%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 74517 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 74576 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 74577 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 74634 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 74635 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 74694 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 74695 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 74754 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||| Sbjct 74755 AGTGTTTTTACAAATATTTGCAT 74777 Score = 136 bits (150), Expect = 4e-27 Identities = 190/263 (72%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 74745 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 74804 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 74805 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 74862 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 74863 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 74922 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 74923 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 74982 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||| Sbjct 74983 AGTGTTTTTACAAATATTTGCAT 75005 Score = 136 bits (150), Expect = 4e-27 Identities = 190/263 (72%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 74973 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 75032 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 75033 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 75090 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 75091 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 75150 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 75151 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 75210 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||| Sbjct 75211 AGTGTTTTTACAAATATTTGCAT 75233 Score = 136 bits (150), Expect = 4e-27 Identities = 190/263 (72%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 75201 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 75260 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 75261 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 75318 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 75319 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 75378 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 75379 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 75438 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||| Sbjct 75439 AGTGTTTTTACAAATATTTGCAT 75461 Score = 136 bits (150), Expect = 4e-27 Identities = 190/263 (72%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || ||| ||||||| | ||||| ||||| Sbjct 75429 TTTACCCGTAAGTGTTTTTACAAATATTTGCATTCCACCTCTCAGCCTTAACACTAAGTG 75488 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGT 94864 | || ||||||||||| | |||||||| || | ||||| || ||||||| ||| Sbjct 75489 AAGCGTCGATTCCTTTTGTATGTTATAAT--CTGAAAGTGTACGACCGTCCTCCAATTGT 75546 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||| || ||| ||||| || ||||| || || ||||| | ||| || Sbjct 75547 TTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTTA 75606 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||| ||| | || || |||| || |||||||| || ||| Sbjct 75607 GCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTA 75666 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||| Sbjct 75667 AGTGTTTTTACAAATATTTGCAT 75689 Score = 129 bits (142), Expect = 5e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 94778 ACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCG 94837 ||||| ||||||| | ||||| ||||| | || ||||||||||| | |||||||| Sbjct 73864 ACTCCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT-- 73921 Query 94838 CTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTG 94895 || | ||||| || ||||||| |||||||| |||| |||| || ||| ||||| | Sbjct 73922 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 73981 Query 94896 GAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT 94955 | ||||| || || ||||| | ||| || ||||| || | | ||| ||| | | Sbjct 73982 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 74041 Query 94956 CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || |||| || |||||||| || ||||| ||||| ||||| || ||||| Sbjct 74042 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74093 >seq183 Length=66479 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 ||||| ||| |||| || | |||| ||||||||| ||||||||||| || ||||| | Sbjct 26571 TAAAAAATTAGTCTCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAA 26630 Query 94827 CGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || || |||| | || || || || || || |||| || | || || Sbjct 26631 TATTGTAGTCTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTT 26690 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| || ||||| || || || || | ||| || ||||| || ||| ||| | Sbjct 26691 GTTGATCAGGTGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTAT 26750 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || | | || || || | ||||||||||| || || || ||||||||||| || |||| Sbjct 26751 CACTGGGCTCTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCA 26810 Query 95007 T 95007 | Sbjct 26811 T 26811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289799090000