Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq237 138 8e-28 seq156 136 3e-27 seq155 136 3e-27 seq183 134 9e-27 >seq237 Length=221212 Score = 138 bits (152), Expect = 8e-28 Identities = 179/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 75687 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 75745 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 75746 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 75805 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 75806 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 75865 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACA 38325 | || || | || || ||||||||||| | ||||| || ||||| ||||| |||||| Sbjct 75866 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT-TTTTACT 75924 Query 38326 AGCTC 38330 || || Sbjct 75925 AGTTC 75929 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 218971 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 218912 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 218911 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 218877 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| | ||||| || ||||| || |||||||| || || ||||| || Sbjct 73867 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 73926 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| ||| Sbjct 73927 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 73986 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| ||| || ||| ||||| | | |||||| | | ||| || Sbjct 73987 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74046 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 74047 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74093 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 74091 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 74149 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 74150 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 74209 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 74210 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 74269 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 74270 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74321 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 74319 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 74377 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 74378 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 74437 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 74438 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 74497 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 74498 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74549 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 74547 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 74605 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 74606 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 74665 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 74666 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 74725 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 74726 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74777 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 74775 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 74833 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 74834 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 74893 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 74894 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 74953 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 74954 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75005 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 75003 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 75061 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 75062 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 75121 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 75122 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 75181 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 75182 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75233 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 75231 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 75289 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 75290 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 75349 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 75350 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 75409 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 75410 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75461 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||| | ||||| || ||||| || |||||||| || || |||| Sbjct 75459 CATT-CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAAT 75517 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | ||| |||| || ||||||||||| ||||| ||||| ||||||||||||| Sbjct 75518 CTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGG 75577 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || ||||| ||| || ||| ||||| | | |||||| | | || Sbjct 75578 GGGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTT 75637 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || ||||||||||| | ||||| || ||||| ||||| Sbjct 75638 CCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75689 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||||||||||||||| || |||||||||||| | Sbjct 216965 CTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTATTAGCTATCGGTCTCACAC 216906 Query 20009 TAATATTTAGCCTTAT 20024 | ||||||| ||||| Sbjct 216905 CAGTATTTAGTCTTAT 216890 >seq156 Length=19347 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 12447 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 12506 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 12507 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 12541 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||||||||||||||| || |||||||||||| | Sbjct 14453 CTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTATTAGCTATCGGTCTCACAC 14512 Query 20009 TAATATTTAGCCTTAT 20024 | ||||||| ||||| Sbjct 14513 CAGTATTTAGTCTTAT 14528 >seq155 Length=11303 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 6901 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 6842 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6841 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6807 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||||||||||||||| || |||||||||||| | Sbjct 4895 CTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTATTAGCTATCGGTCTCACAC 4836 Query 20009 TAATATTTAGCCTTAT 20024 | ||||||| ||||| Sbjct 4835 CAGTATTTAGTCTTAT 4820 >seq183 Length=66479 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || | |||||||||||| | ||| ||| |||||||||||||| || ||| Sbjct 26585 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 26644 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| |||| ||| || || ||||| || || ||||||||||| | || Sbjct 26645 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 26704 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || ||| ||| || ||| ||||| | || |||||| | || ||| Sbjct 26705 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 26764 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || ||||||||||| | |||||||| ||||| ||||| Sbjct 26765 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 26811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946179457750