Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq183 132 4e-26 seq237 127 2e-24 >seq183 Length=66479 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||||||||| || || | || |||||| |||||||| | ||||| ||| | Sbjct 26814 ACTATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCC 26755 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| |||||||| | ||| | || | ||| || || || || ||||||||||| Sbjct 26754 AGTGATACTATCGAAAATGTTAAGGCTAAGATTCAG-GATAAGGAGGGAATTCCACCTGA 26696 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | |||||||| || || ||| ||||||| | |||||| || || || Sbjct 26695 TCAACAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTA 26636 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||||||||||||| || || | ||||| ||| | || || | || ||| Sbjct 26635 CAATATTCAAAAAGAGTCTACTTTGCATTTGGTGTTGAGATTACGCGGTGGA 26584 >seq237 Length=221212 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 75921 AAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACC 75862 Query 25055 GTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| ||||| || | || || || | ||| ||||| || || ||||| || | Sbjct 75861 TAGTGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCG 75803 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | |||||||| || |||||||| || || | ||| || | |||| Sbjct 75802 ATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATT 75743 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 75742 ATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 75689 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 74322 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74263 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 74262 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 74204 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 74203 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 74144 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 74143 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 74093 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 74550 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74491 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 74490 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 74432 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 74431 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 74372 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 74371 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 74321 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 74778 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74719 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 74718 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 74660 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 74659 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 74600 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 74599 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 74549 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 75006 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74947 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 74946 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 74888 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 74887 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 74828 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 74827 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 74777 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 75234 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75175 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 75174 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 75116 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 75115 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 75056 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 75055 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 75005 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 75462 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75403 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 75402 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 75344 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 75343 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 75284 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 75283 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 75233 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 75690 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75631 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 75630 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 75572 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 75571 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 75512 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || ||||| ||||| ||||| || |||||| ||||||| ||||| |||| Sbjct 75511 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAA 75461 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||||||||| || | || |||||| |||| || | || ||||| | Sbjct 74094 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74035 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| || | || || || | ||| ||||| || || ||||| || || | Sbjct 74034 TGATACTATTGAAAATGTAAAGGCTAAGATTCA-AGACAAGGAGGGAATTCCCCCCGATC 73976 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| || |||||||| || || | ||| || | ||||| | Sbjct 73975 AACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATA 73916 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 | || ||||| ||||| ||||| || |||||| ||||||| ||||| ||| Sbjct 73915 ACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 73866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326679703750