Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq237 104 6e-17 >seq237 Length=221212 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 73891 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 73950 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 73951 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 74007 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 74008 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 74067 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 74068 GTAAGTGTTTTTACAAATATTTGCATT 74094 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 74119 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 74178 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 74179 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 74235 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 74236 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 74295 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 74296 GTAAGTGTTTTTACAAATATTTGCATT 74322 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 74347 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 74406 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 74407 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 74463 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 74464 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 74523 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 74524 GTAAGTGTTTTTACAAATATTTGCATT 74550 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 74575 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 74634 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 74635 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 74691 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 74692 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 74751 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 74752 GTAAGTGTTTTTACAAATATTTGCATT 74778 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 74803 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 74862 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 74863 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 74919 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 74920 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 74979 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 74980 GTAAGTGTTTTTACAAATATTTGCATT 75006 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 75031 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 75090 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 75091 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 75147 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 75148 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 75207 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 75208 GTAAGTGTTTTTACAAATATTTGCATT 75234 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 75259 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 75318 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 75319 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 75375 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 75376 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 75435 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 75436 GTAAGTGTTTTTACAAATATTTGCATT 75462 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 75487 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 75546 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 75547 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 75603 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 75604 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 75663 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 75664 GTAAGTGTTTTTACAAATATTTGCATT 75690 Score = 104 bits (114), Expect = 6e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || ||||| || | || || || ||||| || |||||| Sbjct 75715 TGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGT 75774 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||| || || || || || ||||| ||| ||| ||||| || || || || || Sbjct 75775 TTTCCAGCAAAAATTAGTCGTTGTTG---ATCGGGGGGAATTCCCTCCTTGTCTTGAATC 75831 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || || ||||| |||| ||| || | ||| || || || || || || || || Sbjct 75832 TTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCC 75891 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| |||||| Sbjct 75892 GTAAGTGTTTTTACAAATATTTGCATT 75918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650621419500