Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq243 426 1e-113 seq109 302 3e-76 seq241 154 1e-31 seq178 111 1e-18 >seq243 Length=542955 Score = 426 bits (472), Expect = 1e-113 Identities = 1101/1649 (67%), Gaps = 50/1649 (3%) Strand=Plus/Minus Query 517093 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTT-TTCTTGTTATCTGCTTCTT 517151 ||| || || | |||||| || || |||||| || || || ||||| | ||| |||| Sbjct 297665 ATAGTTCTCAAGTTCATTCTTGGATTCAACA-CACCTCTTCTTCTTTTCATCATCTTCCC 297607 Query 517152 CAAA-TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 517210 ||| |||| | ||||| || ||| || ||||| | | | || | |||||| Sbjct 297606 TAAACTTCTCT-GCTTCAGCAACCATCCTATCAATGTCTTGCTGTGAAAGTCTTCCCTTG 297548 Query 517211 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 517270 | ||| || ||||| | || | | || ||| || || || || |||| ||| | Sbjct 297547 TCATTTGTTATAGTTACATGTTCAGTCTTTCCTGTCGACTTGTCGGCAGCAGACACTGTC 297488 Query 517271 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 517330 | |||||||||||||| | ||||| ||||||| ||| || || || ||||| ||||| Sbjct 297487 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 297428 Query 517331 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 517390 || || || || ||||| ||| | || || ||| || || || | ||| Sbjct 297427 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 297368 Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 || || ||||| | ||||| |||| | ||||| |||| | || ||||||||| | Sbjct 297367 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAAT--T 297310 Query 517451 CTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508 || | | || || || || || || ||||| || | |||||||| ||| | Sbjct 297309 CTTGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGC 297250 Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 517568 | || || || | || || || || ||||||||||| | || | | || ||| | | Sbjct 297249 CGGCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCT 297190 Query 517569 T--TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 517626 | | || ||| | ||| | ||| || || |||| ||| || ||||| || || || Sbjct 297189 TGCTAGATT-GTTCG-CCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGC 297132 Query 517627 TTCATCAGGATTAACAGTTTCATTTA----GTTTTTTACCATTGAAAAAATTTGAAAGAA 517682 ||| || || |||| || |||| ||| ||| ||||||||||| | || | Sbjct 297131 TTCGTCTGGGTTAA----TTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCA 297076 Query 517683 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742 ||| || |||||| ||||| | || ||||| || | ||| | |||||| | ||| Sbjct 297075 ATTGCTGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCT 297016 Query 517743 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCCGCTCTAAAC 517801 ||||||| | || ||| ||| ||||||| || ||| | || | | | ||| Sbjct 297015 TCTTATCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAA-AGTGTTTTTGAAC 296957 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 | || | ||| || || |||||| | || ||||| | || | | || || || || Sbjct 296956 ATTTCGGCACAGAGCTCCTCGAATCTGGCCCTAGTGATGTTGCAACTGTAGTCGATGCCA 296897 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 517921 || || | || || || ||||||| | || || || |||| | ||||||||| Sbjct 296896 TCAAATATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCA 296837 Query 517922 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT- 517980 ||||||||| ||| || ||||| ||||| || | || |||| || |||| | || Sbjct 296836 CGTTCACATTGTGTTCTAAGTCTACGTAATGCACGT-CT-ATTGGTTGAAATATTCTTCC 296779 Query 517981 ----ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 || |||| ||| || || || || || | | || | | || ||||| || | Sbjct 296778 CGCCATTCTTTCGCTTAAAGTCATCTACGCAAAAGTTGACCAATCTGTTGTCAAAGTCCT 296719 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 |||| ||||| | |||| ||| || || |||| | |||| |||||||| | || Sbjct 296718 CACCGCCCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAG 296659 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 |||| | |||||| || ||||| |||| ||| ||||| | ||||| |||| Sbjct 296658 TTAAAATTGATACATCGAAAGTGCCACCGCCCAAATCGAAAATCAACACATTTTTTTCAG 296599 Query 518157 T-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 || | | || || || | |||||| |||| || ||||||||||||||||| ||||| Sbjct 296598 AAGTACCT--TTCTTGTCCATACCATAGGCAATTGCGGCAGCAGTTGGTTCATTGATAAT 296541 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | || |||||| | |||||||| | || || || |||||||| |||| ||| ||||| Sbjct 296540 ACGCATAACATTTAACCCAGCAATGGTACCAGCGTCCTTAGTGGCCTGTCGTTGAGAATC 296481 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGC 518333 ||||||||| || || ||||| ||||| |||| || | | ||||| |||| ||||| Sbjct 296480 GTTAAAATAAGCGGGTACAGTGATAACAGCATTAGAGATTGTCTTTCCCAA-ATAAGATT 296422 Query 518334 TTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTG 518391 ||| ||| ||||| || | | | ||| || || |||| ||||| |||| | Sbjct 296421 CTGCAATTTCCTTCATCTTGGTGAGGACCATAGAAGATATTTCCTCTGGGTGGAAGGAT- 296363 Query 518392 CTTGGATTCATTTTGATATGATA-CTTCAAAATATGGTTTATTA------CCAACATTAA 518444 || | |||| ||| || || ||| | | | || |||| | ||| | Sbjct 296362 -TTAGTTTCACCCTGAAATTGTACCTTGATCACA-GGCTTATCATTTGGTCCAGC---CG 296308 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 ||| |||||||||||| ||| ||||| ||| | | | ||||| | | ||| | Sbjct 296307 CAACAGTAAATGGCCAGTGTTTTATATCACTTTGGATGCAGGGATCATTGATCTTTCTCC 296248 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || |||| |||||||||||||| || || ||||| | ||| | |||| ||||| Sbjct 296247 CTATCAATCTTTTTGCATCAAAAACTGTGTTTTCAGGATTTCTAGCATCCTGATTTTTGG 296188 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | || || |||| || | || || || || | |||||| || |||||||| || | Sbjct 296187 CGGCGTCGCCAACCAATCGCTCCACATCAGTGAAGGCAACATAAGACGGAGTTGTACGGT 296128 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684 | ||||||||||| || |||||||| || | |||||| ||| || || ||||| Sbjct 296127 TGCCTTGATCATTGGCTATAATTTCTACAGTTTCATTTTTCCAAACGCCAACACATGAGT 296068 Query 518685 AAGTTGTTCCTAAATCAATACCAATAGCA 518713 |||| ||||| |||||||| ||||||||| Sbjct 296067 AAGTGGTTCCCAAATCAATCCCAATAGCA 296039 >seq109 Length=1716 Score = 302 bits (334), Expect = 3e-76 Identities = 810/1218 (67%), Gaps = 33/1218 (3%) Strand=Plus/Plus Query 517093 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTT-TTCTTGTTATCTGCTTCTT 517151 ||| || || | |||||| || || |||||| || || || ||||| | ||| |||| Sbjct 514 ATAGTTCTCAAGTTCATTCTTGGATTCAACA-CACCTCTTCTTCTTTTCATCATCTTCCC 572 Query 517152 CAAA-TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 517210 ||| |||| | ||||| || ||| || ||||| | | | || | |||||| Sbjct 573 TAAACTTCTCT-GCTTCAGCAACCATCCTATCAATGTCTTGCTGTGAAAGTCTTCCCTTG 631 Query 517211 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 517270 | ||| || ||||| | || | | || ||| || || || || |||| ||| | Sbjct 632 TCATTTGTTATAGTTACATGTTCAGTCTTTCCTGTCGACTTGTCGGCAGCAGACACTGTC 691 Query 517271 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 517330 | |||||||||||||| | ||||| ||||||| ||| || || || ||||| ||||| Sbjct 692 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 751 Query 517331 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 517390 || || || || ||||| ||| | || || ||| || || || | ||| Sbjct 752 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 811 Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 || || ||||| | ||||| |||| | ||||| |||| | || ||||||||| | Sbjct 812 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAAT--T 869 Query 517451 CTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 517508 || | | || || || || || || ||||| || | |||||||| ||| | Sbjct 870 CTTGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGC 929 Query 517509 CTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 517568 | || || || | || || || || ||||||||||| | || | | || ||| | | Sbjct 930 CGGCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCT 989 Query 517569 T--TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 517626 | | || ||| | ||| | ||| || || |||| ||| || ||||| || || || Sbjct 990 TGCTAGATT-GTTCG-CCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGC 1047 Query 517627 TTCATCAGGATTAACAGTTTCATTTA----GTTTTTTACCATTGAAAAAATTTGAAAGAA 517682 ||| || || |||| || |||| ||| ||| ||||||||||| | || | Sbjct 1048 TTCGTCTGGGTTAA----TTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCA 1103 Query 517683 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742 ||| || |||||| ||||| | || ||||| || | ||| | |||||| | ||| Sbjct 1104 ATTGCTGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCT 1163 Query 517743 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCCGCTCTAAAC 517801 ||||||| | || ||| ||| ||||||| || ||| | || | | | ||| Sbjct 1164 TCTTATCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAA-AGTGTTTTTGAAC 1222 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 | || | ||| || || |||||| | || ||||| | || | | || || || || Sbjct 1223 ATTTCGGCACAGAGCTCCTCGAATCTGGCCCTAGTGATGTTGCAACTGTAGTCGATGCCA 1282 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 517921 || || | || || || ||||||| | || || || |||| | ||||||||| Sbjct 1283 TCAAATATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCA 1342 Query 517922 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT- 517980 ||||||||| ||| || ||||| ||||| || | || |||| || |||| | || Sbjct 1343 CGTTCACATTGTGTTCTAAGTCTACGTAATGCACGT-CT-ATTGGTTGAAATATTCTTCC 1400 Query 517981 ----ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 || |||| ||| || || || || || | | || | | || ||||| || | Sbjct 1401 CGCCATTCTTTCGCTTAAAGTCATCTACGCAAAAGTTGACCAATCTGTTGTCAAAGTCCT 1460 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 |||| ||||| | |||| ||| || || |||| | |||| |||||||| | || Sbjct 1461 CACCGCCCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAG 1520 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 |||| | |||||| || ||||| |||| ||| ||||| | ||||| |||| Sbjct 1521 TTAAAATTGATACATCGAAAGTGCCACCGCCCAAATCGAAAATCAACACATTTTTTTCAG 1580 Query 518157 T-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 || | | || || || | |||||| |||| || ||||||||||||||||| ||||| Sbjct 1581 AAGTACCT--TTCTTGTCCATACCATAGGCAATTGCGGCAGCAGTTGGTTCATTGATAAT 1638 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | || |||||| | |||||||| | || || || |||||||| |||| ||| ||||| Sbjct 1639 ACGCATAACATTTAACCCAGCAATGGTACCAGCGTCCTTAGTGGCCTGTCGTTGAGAATC 1698 Query 518275 GTTAAAATATGCAGGAAC 518292 ||||||||| || || || Sbjct 1699 GTTAAAATAAGCGGGTAC 1716 >seq241 Length=536494 Score = 154 bits (170), Expect = 1e-31 Identities = 203/281 (72%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||||||||||||||| || | | ||||| |||||| || ||| | |||| || | || Sbjct 88361 ATCAAAATCTTCACCGCCGAGGTGAGTATCTCCTGATGTCGCTATGACTTCAAATACACC 88420 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 | |||| | | || | |||||| || |||||||| | |||| | | | | Sbjct 88421 GTTGTCAATTGTAAGTAGGGAAACATCAAAAGTACCACCACCGAGATCATAGACCAAAAT 88480 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 ||| |||||| || | | || ||||||||||| |||| |||||| || || ||||| Sbjct 88481 ATTTTTTTCTTCATCCT---TATTGTCAAGACCATAAGCAATAGCAGCGGCTGTGGGTTC 88537 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| | || | || ||||| | |||||||||| ||||||||||| || ||||| | Sbjct 88538 ATTGAGTATACGTAATACATTCAAACCAGCAATTTGACCTGCATCTTTGGTAGCTTGGCG 88597 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | ||| ||||||||||||||||| || | |||||||| Sbjct 88598 CTGGGCATCATTAAAATATGCAGGAACTGTCACAACGGCAT 88638 >seq178 Length=137718 Score = 111 bits (122), Expect = 1e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||| | |||| ||||| || |||||||| ||||| || |||||||| Sbjct 103728 TTCTTCTCCAAACCAAAGGCAAGCGCAGCTGCCGTTGGTTCGTTAATTATCCTCAAAACT 103787 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | |||||| || || | || ||||| || || || ||||||||||||||||||||||| Sbjct 103788 TCAAGACCTGCGATCTTACCCGCATCCTTTGTCGCCTGTCTTTGTGAATCGTTAAAATAA 103847 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || || || || | | || | |||| | | ||| ||| |||| Sbjct 103848 GCGGGTACCGTTATCACTGCTTTTCTCACAGGTCTACCCAAGTGAGCTTCTGCTGTTTCC 103907 Query 518345 TTCATTTTACTTAAAA 518360 |||||||| ||||| Sbjct 103908 TTCATTTTTGATAAAA 103923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780809994176500