Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq243 201 9e-46 seq109 125 6e-23 seq241 111 1e-18 >seq243 Length=542955 Score = 201 bits (222), Expect = 9e-46 Identities = 382/552 (69%), Gaps = 29/552 (5%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| |||||||| || |||||||| |||||| |||||| | Sbjct 296040 GCTATTGGGATTGATTTGGGAACCACTTACTCATGTGTTGGCGTTTGGAAAAATGAAACT 296099 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || |||||||| |||||||||||||| ||| | || ||||| ||||||||| | ||||| Sbjct 296100 GTAGAAATTATAGCCAATGATCAAGGCAACCGTACAACTCCGTCTTATGTTGCCTTCACT 296159 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || | || ||||| || || || ||| |||| | || | |||||| || Sbjct 296160 GATGTGGAGCGATTGGTTGGCGACGCCGCCAAAAATCAGGATGCTAGAAATCCTGAAAAC 296219 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTG--TTCAGG 550229 || |||||||||| ||| | || || || |||| | |||||| | ||| | || Sbjct 296220 ACAGTTTTTGATGCAAAAAGATTGATAGGGAGAAAGATCAATGATCC--CTGCATCCAAA 296277 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 ||||| || || ||||| || | ||| || ||||| | | || ||| Sbjct 296278 GTGATATAAAACACTGGCCATT---TACTGT---TGCGGCTGGACCAAATGAT----AAG 296327 Query 550290 CTACTCATGAAGG----ATCT----GTTAAAC--AAT--TTTCA-CCAGAACAAATTTCA 550336 | | || |||| || | || |||| ||| || || ||||| |||| || Sbjct 296328 CCTGTGATCAAGGTACAATTTCAGGGTGAAACTAAATCCTTCCACCCAGAGGAAATATCT 296387 Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTAC 550395 |||||||| | | || ||||| ||| | ||| || |||| |||| | | | Sbjct 296388 TCTATGGTCCTCACCAAGATGAAGGAAATTG-CAGAATCTTATTTGGGAAAGACAATCTC 296446 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||| || || |||||||| || |||||||| || || ||||| || || ||||| || Sbjct 296447 TAATGCTGTTATCACTGTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGA 296506 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||| |||||||| | |||||| | ||||||||||||||||| |||||||| || Sbjct 296507 CGCTGGTACCATTGCTGGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGC 296566 Query 550516 ACTTGCATATGG 550527 | |||| ||||| Sbjct 296567 AATTGCCTATGG 296578 Score = 125 bits (138), Expect = 6e-23 Identities = 420/642 (65%), Gaps = 20/642 (3%) Strand=Plus/Plus Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 |||| |||| ||||| | ||||||| || || || || | | || | |||| Sbjct 296869 CCACGATTGTTGTAGAAGCTATATTTGATGGCATCGACTACAGTTGCAACATCACTAGGG 296928 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAA--CCAGTAGAACA 552076 ||| ||| || || | ||| | || | || | |||||| || || ||||| ||| | Sbjct 296929 CCAGATTCGAGGAGCTCTGTGCCGAAATGTTCA--AAAACACTTTAATCCCAGTCGAAAA 296986 Query 552077 AGTTTTAAGAGATTCAAAGATTGATAA-ATCCAAAGTACATGAAATTGTGCTTGTTGGTG 552135 || ||| ||| || | || ||||| | || | | |||||| | || ||||| || | Sbjct 296987 AGCCTTAGCTGATGCAGATATGGATAAGAAGCAGA-TCCATGAAGTGGTACTTGTAGGAG 297045 Query 552136 GATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAA 552194 | || || | || ||||| || | || || ||||| ||| ||||||||| ||| || Sbjct 297046 GTTCGACCCGTATCCCTAAGATACAGCAATTGATTAAGGACTT-TTTCAATGGCAAAGAA 297104 Query 552195 TT----AAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 |||| || |||| ||||| || || || |||||||| || || |||| || Sbjct 297105 CCCTGCAAATCAA----TTAACCCAGACGAAGCAGTAGCCTATGGCGCGGCTGTTCAGGC 297160 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAA--AAACTACAAAATATTGTACTTGTAGATGTT 552308 || ||| | |||| | ||| || | || | ||| || | | | ||||||| Sbjct 297161 TGCAATTTTAACTGG-CGAACA-ATCTAGCAAGGTCCAAGATTTACTGTTACTAGATGTC 297218 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 ||||| || || || || | || || | || ||| ||||||| || || ||| Sbjct 297219 ACTCCACTGTCACTAGGACTTGAGACCGCCGGCGGTGTTATGACCGTGCTGATACCCAGA 297278 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 ||||||||||| || || || | | |||| | || || | |||| ||||| Sbjct 297279 AATACTACTATCCCCGCCAAGAAGGAACAAGAATTTACAACCAATGAAAATAACCAAACG 297338 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | |||| || || | || ||||||||| | | || || || ||| ||| Sbjct 297339 GGGGTTATGATCCAGGTCTTCGAAGGAGAACGTTCTATGACATGTGACAACAATTTACTA 297398 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548 || | || |||| || || ||||||||||| | ||||| || || ||| |||| Sbjct 297399 GGCAAATTCCATTTGACTGGCATACCTCCTGCTCCAAGAGGAGTTCCCCAGATTAAAGTC 297458 Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || || || |||||||||||||| || |||| ||| ||||| Sbjct 297459 ACCTTTGACATCGATGCCAATGGTATATTGACAGTGTCTGCT 297500 >seq109 Length=1716 Score = 125 bits (138), Expect = 6e-23 Identities = 420/642 (65%), Gaps = 20/642 (3%) Strand=Plus/Minus Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 |||| |||| ||||| | ||||||| || || || || | | || | |||| Sbjct 1310 CCACGATTGTTGTAGAAGCTATATTTGATGGCATCGACTACAGTTGCAACATCACTAGGG 1251 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAA--CCAGTAGAACA 552076 ||| ||| || || | ||| | || | || | |||||| || || ||||| ||| | Sbjct 1250 CCAGATTCGAGGAGCTCTGTGCCGAAATGTTCA--AAAACACTTTAATCCCAGTCGAAAA 1193 Query 552077 AGTTTTAAGAGATTCAAAGATTGATAA-ATCCAAAGTACATGAAATTGTGCTTGTTGGTG 552135 || ||| ||| || | || ||||| | || | | |||||| | || ||||| || | Sbjct 1192 AGCCTTAGCTGATGCAGATATGGATAAGAAGCAGA-TCCATGAAGTGGTACTTGTAGGAG 1134 Query 552136 GATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAA 552194 | || || | || ||||| || | || || ||||| ||| ||||||||| ||| || Sbjct 1133 GTTCGACCCGTATCCCTAAGATACAGCAATTGATTAAGGACTT-TTTCAATGGCAAAGAA 1075 Query 552195 TT----AAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGC 552250 |||| || |||| ||||| || || || |||||||| || || |||| || Sbjct 1074 CCCTGCAAATCAA----TTAACCCAGACGAAGCAGTAGCCTATGGCGCGGCTGTTCAGGC 1019 Query 552251 AGCTATTCTTTCTGGACAAACTGATGAA--AAACTACAAAATATTGTACTTGTAGATGTT 552308 || ||| | |||| | ||| || | || | ||| || | | | ||||||| Sbjct 1018 TGCAATTTTAACTGG-CGAACA-ATCTAGCAAGGTCCAAGATTTACTGTTACTAGATGTC 961 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 ||||| || || || || | || || | || ||| ||||||| || || ||| Sbjct 960 ACTCCACTGTCACTAGGACTTGAGACCGCCGGCGGTGTTATGACCGTGCTGATACCCAGA 901 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 ||||||||||| || || || | | |||| | || || | |||| ||||| Sbjct 900 AATACTACTATCCCCGCCAAGAAGGAACAAGAATTTACAACCAATGAAAATAACCAAACG 841 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | |||| || || | || ||||||||| | | || || || ||| ||| Sbjct 840 GGGGTTATGATCCAGGTCTTCGAAGGAGAACGTTCTATGACATGTGACAACAATTTACTA 781 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548 || | || |||| || || ||||||||||| | ||||| || || ||| |||| Sbjct 780 GGCAAATTCCATTTGACTGGCATACCTCCTGCTCCAAGAGGAGTTCCCCAGATTAAAGTC 721 Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || || || |||||||||||||| || |||| ||| ||||| Sbjct 720 ACCTTTGACATCGATGCCAATGGTATATTGACAGTGTCTGCT 679 Score = 105 bits (116), Expect = 5e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 ||||| || |||||||| || || ||||| || || ||||| || ||||| |||||| Sbjct 1716 GTACCCGCTTATTTTAACGATTCTCAACGACAGGCCACTAAGGACGCTGGTACCATTGCT 1657 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || | |||||| | ||||||||||||||||| |||||||| ||| |||| ||||| Sbjct 1656 GGGTTAAATGTTATGCGTATTATCAATGAACCAACTGCTGCCGCAATTGCCTATGG 1601 >seq241 Length=536494 Score = 111 bits (122), Expect = 1e-18 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 ||| | ||||| ||||| |||| || | || || || |||||||||||||| | Sbjct 88660 TTTCTCGGTCAGACAGTTAAAAATGCCGTTGTGACAGTTCCTGCATATTTTAATGATGCC 88601 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 || || |||||||| |||||||| || | |||||||| | ||||| | ||||| || Sbjct 88600 CAGCGCCAAGCTACCAAAGATGCAGGTCAAATTGCTGGTTTGAATGTATTACGTATACTC 88541 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAA 550552 |||||||| || || ||||| |||| ||||| ||||| | |||| ||| ||||| Sbjct 88540 AATGAACCCACAGCCGCTGCTATTGCTTATGGTCTTGACA---ATAAGGATGAAGAA 88487 Score = 98.7 bits (108), Expect = 8e-15 Identities = 183/270 (68%), Gaps = 9/270 (3%) Strand=Plus/Minus Query 552057 ACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACAT 552116 ||| | ||||||||| | | || |||| | | ||| |||| ||||| | | ||| Sbjct 88126 ACATTGGAACCAGTAAAGGACGTGTTAAACCAAGCCAAGCTTGAGAAATCTGATATCCAT 88067 Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT 552176 || || || || |||||||| || || |||||||||||||| | || || | | | Sbjct 88066 GACATAGTTCTAGTTGGTGGGTCAACCAGAATTCCTAAAATCCAGCAATTGATCAAGGAT 88007 Query 552177 TATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGT 552236 | |||||||| ||| | || | || |||| || ||||| ||||||||||| || Sbjct 88006 TTCTTCAATGGCAAAGAGCCCAACAAGGGTATTAACCCTGATGAAGCTGTTGCCTACGGA 87947 Query 552237 GCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTA 552296 || ||| | |||| | ||| ||| |||| || || | || ||| | ||| Sbjct 87946 GCGGCAGTACAAGGCGGTATACTTGCTGGTGAATCTCACGATGAAC---------TGGTA 87896 Query 552297 CTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| | ||||| ||||| ||||| || ||| Sbjct 87895 CTTTTGGATGTGACTCCGCTATCACTGGGT 87866 Score = 93.3 bits (102), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 14/219 (6%) Strand=Plus/Plus Query 361626 AAACATCGAGTGTTCCTGCACCTAAATCATATATGATAATATTCCCCCCGTTTTTATTTT 361685 ||||||| | || || |||| | |||||| | | |||||| ||||| || Sbjct 88441 AAACATCAAAAGTACCACCACCGAGATCATAGACCAAAATATT-------TTTTTCTTCA 88493 Query 361686 TCCAAGTTTTACTTCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTAT-T 361744 ||| ||| | ||||||||||||| | | ||| ||||| ||||| || | ||| Sbjct 88494 TCC-----TTATTGTCAAGACCATAAGCAATAGCAGCGGCTGTGGGTTCATTGAGTATAC 88548 Query 361745 TTAATAACATTGAGTCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCA 361804 |||| ||||| | || || |||| ||||||| || ||||| || || |||||| Sbjct 88549 GTAAT-ACATTCAAACCAGCAATTTGACCTGCATCTTTGGTAGCTTGGCGCTGGGCATCA 88607 Query 361805 TTAAAATATGCAGGAACAGTAATCACTGCTTTTTCAACT 361843 ||||||||||||||||| || | || || |||| |||| Sbjct 88608 TTAAAATATGCAGGAACTGTCACAACGGCATTTTTAACT 88646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029282778872500