Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq183 118 8e-22 seq237 113 3e-20 >seq183 Length=66479 Score = 118 bits (130), Expect = 8e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| || || | || | |||||||||||| | || |||||||||||||||||| || Sbjct 26581 GTCTCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTC 26640 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 || ||| | || |||| || | |||||||| ||||| |||||||| |||||||| | Sbjct 26641 TGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGG 26700 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 |||| |||||||| || |||||| || ||| | | || || | ||| Sbjct 26701 TGGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTC 26760 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || |||| || || ||||| ||||| | ||||| ||||| || ||||| ||| Sbjct 26761 TACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCATAGTG 26815 >seq237 Length=221212 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 73867 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 73926 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 73927 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 73986 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 73987 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74046 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 74047 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74093 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 74095 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74154 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 74155 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74214 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 74215 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74274 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 74275 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74321 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 74323 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74382 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 74383 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74442 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 74443 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74502 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 74503 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74549 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 74551 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74610 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 74611 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74670 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 74671 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74730 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 74731 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74777 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 74779 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 74838 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 74839 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 74898 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 74899 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 74958 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 74959 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75005 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 75007 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75066 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 75067 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75126 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 75127 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75186 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 75187 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75233 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 75235 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75294 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 75295 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75354 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 75355 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75414 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 75415 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75461 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 75463 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75522 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 75523 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75582 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 75583 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75642 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 75643 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75689 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||||| || || ||||| || ||||| || || ||||| || Sbjct 75691 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 75750 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| || ||||| |||||||| | |||| Sbjct 75751 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 75810 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| |||||| | | || || | |||||| Sbjct 75811 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 75870 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| ||||| | ||||||||||| || ||||| Sbjct 75871 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936439330750