Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq237 127 2e-24 >seq237 Length=221212 Score = 127 bits (140), Expect = 2e-24 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 28548 GTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAA 28607 ||||||||||||||||||||||||||| | |||||||||||||| ||| || |||| Sbjct 75923 GTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAA 75864 Query 28608 CCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTA 28667 ||| || || | | || | ||| || || ||||| |||||| | ||| Sbjct 75863 CCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCC 75804 Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCG 28725 |||||||| |||| || ||||| || ||||||||||| || || | ||| | | | Sbjct 75803 GATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAG 75746 Query 28726 ATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 |||||||||| ||||| ||||| || || ||| | || ||||| Sbjct 75745 ATTATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 75703 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 74094 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74035 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 74034 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 73975 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 73974 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 73917 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 73916 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 73879 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 74322 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74263 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 74262 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74203 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 74202 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74145 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 74144 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 74107 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 74550 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74491 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 74490 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74431 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 74430 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74373 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 74372 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 74335 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 74778 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74719 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 74718 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74659 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 74658 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74601 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 74600 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 74563 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 75006 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74947 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 74946 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74887 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 74886 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 74829 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 74828 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 74791 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 75234 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75175 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 75174 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75115 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 75114 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75057 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 75056 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 75019 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 75462 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75403 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 75402 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75343 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 75342 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75285 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 75284 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 75247 Score = 118 bits (130), Expect = 9e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||||||||||||||||||| | |||||||||||||| ||| || ||||||| Sbjct 75690 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75631 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| || || ||||| |||||| | ||| ||||| Sbjct 75630 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75571 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTAT 28730 ||| |||| || ||||| || ||||||||||| || || | ||| | | |||||| Sbjct 75570 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT--CAGATTAT 75513 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||||| ||||| ||||| || || ||| | || ||||| Sbjct 75512 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAG 75475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403503844750