Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq237 136 7e-27 seq183 125 1e-23 >seq237 Length=221212 Score = 136 bits (150), Expect = 7e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 75763 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 75822 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 75823 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75882 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| || || ||||||||||||||||||||||| Sbjct 75883 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTT 75920 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 73939 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 73998 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 73999 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74058 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 74059 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74094 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 74167 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 74226 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 74227 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74286 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 74287 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74322 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 74395 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 74454 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 74455 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74514 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 74515 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74550 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 74623 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 74682 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 74683 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74742 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 74743 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 74778 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 74851 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 74910 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 74911 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 74970 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 74971 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75006 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 75079 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 75138 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 75139 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75198 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 75199 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75234 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 75307 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 75366 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 75367 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75426 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 75427 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75462 Score = 132 bits (146), Expect = 9e-26 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||||| || |||||||| || || ||||| || || Sbjct 75535 TCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTG 75594 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | |||| |||| ||||||||| || || || || || ||||| Sbjct 75595 TCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATG 75654 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||||| || || ||||||||||||||||||||| Sbjct 75655 GTTTTACCCGTAAGTGTTTTTACAAATATTTGCATT 75690 >seq183 Length=66479 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | |||| | |||| |||||| |||| |||||| |||||| ||||| || Sbjct 26585 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 26644 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | || |||| ||| || || |||||||| | || ||||||||||| || Sbjct 26645 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 26704 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| || ||||| || || || | || | |||| |||||||| | ||| ||| Sbjct 26705 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 26764 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || |||||||| || || ||||| |||||||||||||| Sbjct 26765 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 26811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899651588580000