Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq243 405 4e-107 seq109 297 1e-74 seq241 159 3e-33 seq178 120 2e-21 >seq243 Length=542955 Score = 405 bits (448), Expect = 4e-107 Identities = 1096/1649 (66%), Gaps = 50/1649 (3%) Strand=Plus/Minus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTT-TTCTTGTTATCTGCTTCTT 281318 ||| || || | |||||| || || |||||| || || || ||||| | ||| |||| Sbjct 297665 ATAGTTCTCAAGTTCATTCTTGGATTCAACA-CACCTCTTCTTCTTTTCATCATCTTCCC 297607 Query 281319 CAAA-TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 281377 ||| |||| | ||||| || ||| || ||||| | | | || | |||||| Sbjct 297606 TAAACTTCTCT-GCTTCAGCAACCATCCTATCAATGTCTTGCTGTGAAAGTCTTCCCTTG 297548 Query 281378 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 281437 | ||| || ||||| | || | | || ||| || || || || |||| ||| | Sbjct 297547 TCATTTGTTATAGTTACATGTTCAGTCTTTCCTGTCGACTTGTCGGCAGCAGACACTGTC 297488 Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497 | |||||||||||||| | ||||| ||||||| ||| || || || ||||| ||||| Sbjct 297487 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 297428 Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557 || || || || ||||| ||| | || || ||| || || || | ||| Sbjct 297427 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 297368 Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 || || ||||| | ||||| |||| | ||||| |||| | || ||||||||| | Sbjct 297367 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAAT--T 297310 Query 281618 CTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 281675 || | | || || || || || || ||||| || | |||||||| ||| | Sbjct 297309 CTTGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGC 297250 Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735 | || || || | || || || || ||||||||||| | || | | || ||| | | Sbjct 297249 CGGCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCT 297190 Query 281736 T--TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 281793 | | || ||| | ||| | ||| || || |||| ||| || ||||| || || || Sbjct 297189 TGCTAGATT-GTTCG-CCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGC 297132 Query 281794 TTCATCAGGATTAACAGTTTCATTTA----GTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 ||| || || |||| || |||| ||| ||| ||||||||||| | || | Sbjct 297131 TTCGTCTGGGTTAA----TTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCA 297076 Query 281850 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 ||| || |||||| ||||| | || ||||| || | ||| | |||||| | ||| Sbjct 297075 ATTGCTGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCT 297016 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAAC 281968 ||||||| | || ||| ||| ||||||| || ||| | || | | | ||| Sbjct 297015 TCTTATCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAA-AGTGTTTTTGAAC 296957 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028 | || | ||| || || |||||| | || ||||| | || | | || || || || Sbjct 296956 ATTTCGGCACAGAGCTCCTCGAATCTGGCCCTAGTGATGTTGCAACTGTAGTCGATGCCA 296897 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 || || | || || || ||||||| | || || || |||| | ||||||||| Sbjct 296896 TCAAATATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCA 296837 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT- 282147 ||||||||| ||| || ||||| ||||| || | || |||| || |||| | || Sbjct 296836 CGTTCACATTGTGTTCTAAGTCTACGTAATGCACGT-CT-ATTGGTTGAAATATTCTTCC 296779 Query 282148 ----ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 || |||| ||| || || || || || | | || | | || ||||| || | Sbjct 296778 CGCCATTCTTTCGCTTAAAGTCATCTACGCAAAAGTTGACCAATCTGTTGTCAAAGTCCT 296719 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 |||| ||||| | |||| ||| || || |||| | |||| |||||||| | || Sbjct 296718 CACCGCCCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAG 296659 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 |||| | ||||| || ||||| |||| ||| ||||| | ||||| |||| Sbjct 296658 TTAAAATTGATACATCGAAAGTGCCACCGCCCAAATCGAAAATCAACACATTTTTTTCAG 296599 Query 282324 T-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 || | | || || || | |||||| |||| || ||||||||||||||||| ||||| Sbjct 296598 AAGTACCT--TTCTTGTCCATACCATAGGCAATTGCGGCAGCAGTTGGTTCATTGATAAT 296541 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | || |||||| | |||||||| | || || || |||||||| |||| ||| ||||| Sbjct 296540 ACGCATAACATTTAACCCAGCAATGGTACCAGCGTCCTTAGTGGCCTGTCGTTGAGAATC 296481 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAAGCGC 282500 ||||||||| || || ||||| ||||| |||| | | | ||||| |||| ||||| Sbjct 296480 GTTAAAATAAGCGGGTACAGTGATAACAGCATTAGAGATTGTCTTTCCCAA-ATAAGATT 296422 Query 282501 TTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTG 282558 ||| ||| ||||| || | | | ||| || || |||| ||||| ||| | Sbjct 296421 CTGCAATTTCCTTCATCTTGGTGAGGACCATAGAAGATATTTCCTCTGGGTGGAAGGAT- 296363 Query 282559 CTTGGATTCATTTTGATATGATA-CTTCAAAATATGGTTTATTA------CCAACATTAA 282611 || | |||| ||| || || ||| | | | || |||| | ||| | Sbjct 296362 -TTAGTTTCACCCTGAAATTGTACCTTGATCACA-GGCTTATCATTTGGTCCAGC---CG 296308 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 ||| |||||||||| | ||| ||||| ||| | | | ||||| | | ||| | Sbjct 296307 CAACAGTAAATGGCCAGTGTTTTATATCACTTTGGATGCAGGGATCATTGATCTTTCTCC 296248 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 | || |||| |||||||||||||| || || ||||| ||| | |||| ||||| Sbjct 296247 CTATCAATCTTTTTGCATCAAAAACTGTGTTTTCAGGATTTCTAGCATCCTGATTTTTGG 296188 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 | || || |||| || | || || || || | |||||| || |||||||| || | Sbjct 296187 CGGCGTCGCCAACCAATCGCTCCACATCAGTGAAGGCAACATAAGACGGAGTTGTACGGT 296128 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 | ||||||||||| || |||||||| || | |||||| ||| || || ||||| Sbjct 296127 TGCCTTGATCATTGGCTATAATTTCTACAGTTTCATTTTTCCAAACGCCAACACATGAGT 296068 Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCA 282880 |||| ||||| |||||||| ||||||||| Sbjct 296067 AAGTGGTTCCCAAATCAATCCCAATAGCA 296039 >seq109 Length=1716 Score = 297 bits (328), Expect = 1e-74 Identities = 809/1218 (66%), Gaps = 33/1218 (3%) Strand=Plus/Plus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACAGCAGCTTTT-TTCTTGTTATCTGCTTCTT 281318 ||| || || | |||||| || || |||||| || || || ||||| | ||| |||| Sbjct 514 ATAGTTCTCAAGTTCATTCTTGGATTCAACA-CACCTCTTCTTCTTTTCATCATCTTCCC 572 Query 281319 CAAA-TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGA 281377 ||| |||| | ||||| || ||| || ||||| | | | || | |||||| Sbjct 573 TAAACTTCTCT-GCTTCAGCAACCATCCTATCAATGTCTTGCTGTGAAAGTCTTCCCTTG 631 Query 281378 TTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTA 281437 | ||| || ||||| | || | | || ||| || || || || |||| ||| | Sbjct 632 TCATTTGTTATAGTTACATGTTCAGTCTTTCCTGTCGACTTGTCGGCAGCAGACACTGTC 691 Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497 | |||||||||||||| | ||||| ||||||| ||| || || || ||||| ||||| Sbjct 692 AATATACCATTGGCATCGATGTCAAAGGTGACTTTAATCTGGGGAACTCCTCTTGGAGCA 751 Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557 || || || || ||||| ||| | || || ||| || || || | ||| Sbjct 752 GGAGGTATGCCAGTCAAATGGAATTTGCCTAGTAAATTGTTGTCACATGTCATAGAACGT 811 Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 || || ||||| | ||||| |||| | ||||| |||| | || ||||||||| | Sbjct 812 TCTCCTTCGAAGACCTGGATCATAACCCCCGTTTGGTTATTTTCATTGGTTGTAAAT--T 869 Query 281618 CTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCAC 281675 || | | || || || || || || ||||| || | |||||||| ||| | Sbjct 870 CTTGTTCCTTCTTGGCGGGGATAGTAGTATTTCTGGGTATCAGCACGGTCATAACACCGC 929 Query 281676 CAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTT 281735 | || || || | || || || || ||||||||||| | || | | || ||| | | Sbjct 930 CGGCGGTCTCAAGTCCTAGTGACAGTGGAGTGACATCTAGTAACAGTAAATCTTGGACCT 989 Query 281736 T--TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 281793 | | || ||| | ||| | ||| || || |||| ||| || ||||| || || || Sbjct 990 TGCTAGATT-GTTCG-CCAGTTAAAATTGCAGCCTGAACAGCCGCGCCATAGGCTACTGC 1047 Query 281794 TTCATCAGGATTAACAGTTTCATTTA----GTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 ||| || || |||| || |||| ||| ||| ||||||||||| | || | Sbjct 1048 TTCGTCTGGGTTAA----TTGATTTGCAGGGTTCTTTGCCATTGAAAAAGTCCTTAATCA 1103 Query 281850 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 ||| || |||||| ||||| | || ||||| || | ||| | |||||| | ||| Sbjct 1104 ATTGCTGTATCTTAGGGATACGGGTCGAACCTCCTACAAGTACCACTTCATGGATCTGCT 1163 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAAC 281968 ||||||| | || ||| ||| ||||||| || ||| | || | | | ||| Sbjct 1164 TCTTATCCATATCTGCATCAGCTAAGGCTTTTTCGACTGGGATTAA-AGTGTTTTTGAAC 1222 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028 | || | ||| || || |||||| | || ||||| | || | | || || || || Sbjct 1223 ATTTCGGCACAGAGCTCCTCGAATCTGGCCCTAGTGATGTTGCAACTGTAGTCGATGCCA 1282 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 || || | || || || ||||||| | || || || |||| | ||||||||| Sbjct 1283 TCAAATATAGCTTCTACAACAATCGTGGCCTGTGTTGAGTGGGATAAGGTGCGTTTAGCA 1342 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT- 282147 ||||||||| ||| || ||||| ||||| || | || |||| || |||| | || Sbjct 1343 CGTTCACATTGTGTTCTAAGTCTACGTAATGCACGT-CT-ATTGGTTGAAATATTCTTCC 1400 Query 282148 ----ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 || |||| ||| || || || || || | | || | | || ||||| || | Sbjct 1401 CGCCATTCTTTCGCTTAAAGTCATCTACGCAAAAGTTGACCAATCTGTTGTCAAAGTCCT 1460 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 |||| ||||| | |||| ||| || || |||| | |||| |||||||| | || Sbjct 1461 CACCGCCCAAGTGGGTATCACCTTGTGTGGCCTTTACCTCAAAAATGCCATCTTCGATAG 1520 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 |||| | ||||| || ||||| |||| ||| ||||| | ||||| |||| Sbjct 1521 TTAAAATTGATACATCGAAAGTGCCACCGCCCAAATCGAAAATCAACACATTTTTTTCAG 1580 Query 282324 T-GT-CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 || | | || || || | |||||| |||| || ||||||||||||||||| ||||| Sbjct 1581 AAGTACCT--TTCTTGTCCATACCATAGGCAATTGCGGCAGCAGTTGGTTCATTGATAAT 1638 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | || |||||| | |||||||| | || || || |||||||| |||| ||| ||||| Sbjct 1639 ACGCATAACATTTAACCCAGCAATGGTACCAGCGTCCTTAGTGGCCTGTCGTTGAGAATC 1698 Query 282442 GTTAAAATATGCAGGAAC 282459 ||||||||| || || || Sbjct 1699 GTTAAAATAAGCGGGTAC 1716 >seq241 Length=536494 Score = 159 bits (176), Expect = 3e-33 Identities = 209/289 (72%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 ||||||||||||||| || | | ||||| |||||| || ||| | |||| || | || Sbjct 88361 ATCAAAATCTTCACCGCCGAGGTGAGTATCTCCTGATGTCGCTATGACTTCAAATACACC 88420 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 | |||| | | || | ||||||| || |||||||| | |||| | | | | Sbjct 88421 GTTGTCAATTGTAAGTAGGGAAACATCAAAAGTACCACCACCGAGATCATAGACCAAAAT 88480 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 ||| |||||| || | | || ||||||||||| |||| |||||| || || ||||| Sbjct 88481 ATTTTTTTCTTCATCCT---TATTGTCAAGACCATAAGCAATAGCAGCGGCTGTGGGTTC 88537 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 ||| | || | || ||||| | |||||||||| ||||||||||| || ||||| | Sbjct 88538 ATTGAGTATACGTAATACATTCAAACCAGCAATTTGACCTGCATCTTTGGTAGCTTGGCG 88597 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || | ||| ||||||||||||||||| || | |||||||| | | ||| Sbjct 88598 CTGGGCATCATTAAAATATGCAGGAACTGTCACAACGGCATTTTTAACT 88646 >seq178 Length=137718 Score = 120 bits (132), Expect = 2e-21 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||| | |||| ||||| || |||||||| ||||| || |||||||| Sbjct 103728 TTCTTCTCCAAACCAAAGGCAAGCGCAGCTGCCGTTGGTTCGTTAATTATCCTCAAAACT 103787 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | |||||| || || | || ||||| || || || ||||||||||||||||||||||| Sbjct 103788 TCAAGACCTGCGATCTTACCCGCATCCTTTGTCGCCTGTCTTTGTGAATCGTTAAAATAA 103847 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || || || || | | | || | | || | | ||| |||||||| Sbjct 103848 GCGGGTACCGTTATCACTGCTTTTCTCACAGGTCTACCCAAGTGAGCTTCTGCTGTTTCC 103907 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTG 282562 |||||||| ||||| || | ||||| ||||||||||| ||| Sbjct 103908 TTCATTTTTGATAAAACAATAGCGCCTATTTGGGAAGGAGAATATTGTTTG 103958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740618126056500