Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq241 215 7e-51 seq236 87.8 2e-12 seq231 87.8 2e-12 seq180 87.8 2e-12 >seq241 Length=536494 Score = 215 bits (238), Expect = 7e-51 Identities = 667/1022 (65%), Gaps = 24/1022 (2%) Strand=Plus/Minus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||||||||| ||||| | ||| | || | || || || || || ||||| Sbjct 150447 TAAATTGTTTCAAAAATTCTGACATTCAATTCACGGGCCTCCTGAGATTCAAAAGGATAG 150388 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | ||| || || | ||| || ||||||||||| || | ||| || || ||||||||| Sbjct 150387 CGCATAAGCATGAAAGTATCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTC 150328 Query 69136 TTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 || || ||| |||||| || |||| ||| |||||||| ||||||||| |||| | | Sbjct 150327 TTGTTAGAATATTCAGCCTCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAA 150268 Query 69196 TTTCGGACTACTACTTT--AACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA---- 69249 || | || || || || | || | ||| |||||| || | Sbjct 150267 TTGAAAGTAAGTATCTTGCAAGCAGAA--TGTAATAACTTAAAGTCAAAT--TCGAGAGT 150212 Query 69250 TCTA----TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATT 69305 | || | ||| || | || ||||| || || || ||||| ||||| || ||||| Sbjct 150211 TTTAGTGTTTACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATT 150152 Query 69306 AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATT 69365 || | || |||||| | ||||| |||| || ||| | || ||||| || | || Sbjct 150151 AGGAGATGTATATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTT 150092 Query 69366 TTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTC 69425 | |||||| ||| | ||||| ||||||||||| | || | ||||| || ||||| Sbjct 150091 CTTCTGATTTGACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTC 150032 Query 69426 AATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG 69485 ||| || |||| | |||| ||||| | || | | || ||| || Sbjct 150031 AATTTGCGATTGTAAGATAGCAAACCAAAGGGTTTGCGCGGGAACT---GTTTTGCGACC 149975 Query 69486 CTTCTCTTTT---TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATC 69542 | | |||| ||||| || |||| ||| ||||| ||||||||||| | ||| Sbjct 149974 CATGCCTTTCGACTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATC 149915 Query 69543 CAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTT 69602 | ||| ||| |||| ||| |||||||| | ||| |||| | | | ||| | ||| Sbjct 149914 TAGTCCTCTACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTT 149855 Query 69603 CATAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCAT 69661 ||| || || || || ||||| | || ||| || | || || | || || || Sbjct 149854 CATGAAAAGGTCTGGGATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTG 149796 Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721 || |||||| ||||| || || || | |||||||| ||||||||| ||||| | Sbjct 149795 AACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGT 149736 Query 69722 ATATCGCCA-TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 | || || | ||| || || ||| ||||||||||| | || | ||||| | | Sbjct 149735 AGATGGCAAATGAA-CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCA 149677 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || | | ||| ||||| || ||||| ||||| || | |||||||| || ||| || Sbjct 149676 TTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTAT 149617 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 | || || || || || | || |||||| |||||||| | ||| || Sbjct 149616 GAACTGGAGGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATG 149557 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 || ||||| | | | |||||| | ||||| || |||||| | || | |||| Sbjct 149556 AGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGA 149497 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 || || ||||||||||||||| || | ||||||| | || || | ||| |||| ||| Sbjct 149496 AGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCG 149437 Query 70021 TG 70022 || Sbjct 149436 TG 149435 >seq236 Length=138068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 ||||| ||||| || || |||| |||||| ||||| || || || ||||| || || Sbjct 115375 TGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAAAGGTTAGCCCGGGCATGAGCCCG 115434 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGC 39750 || ||||| |||||||||||||| ||| ||| | || ||||| || || ||||| ||||| Sbjct 115435 CGTTTTTTCAGCCAAAATATGGC-GCAGAAGCTACCCGAAAATAAAATTCCTTCCACTGC 115493 >seq231 Length=443877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 ||||| ||||| || || |||| |||||| ||||| || || || ||||| || || Sbjct 402378 TGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAAAGGTTAGCCCGGGCATGAGCCCG 402319 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGC 39750 || ||||| |||||||||||||| ||| ||| | || ||||| || || ||||| ||||| Sbjct 402318 CGTTTTTTCAGCCAAAATATGGC-GCAGAAGCTACCCGAAAATAAAATTCCTTCCACTGC 402260 >seq180 Length=127670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 ||||| ||||| || || |||| |||||| ||||| || || || ||||| || || Sbjct 22694 TGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAAAGGTTAGCCCGGGCATGAGCCCG 22635 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCTTCTACTGC 39750 || ||||| |||||||||||||| ||| ||| | || ||||| || || ||||| ||||| Sbjct 22634 CGTTTTTTCAGCCAAAATATGGC-GCAGAAGCTACCCGAAAATAAAATTCCTTCCACTGC 22576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906653410000