Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq241 105 8e-18 seq249 100 3e-16 >seq241 Length=536494 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGC 104325 || |||||| || | ||||||| ||| | | |||||| ||| || || || ||||| Sbjct 149381 GATATTGATCGTGCCATGGAGACTTACAATTACATGTCC-AAGAAATTATTTATCCACGC 149439 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTAT 104385 || || || |||||||| |||| || | || |||||||| || ||||||||| | Sbjct 149440 CACTCCCACACTCTTCAACTCTGGAACTAAATTTCCTCAAATGTCTAGCTGCTTCCTTCT 149499 Query 104386 CGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAAT 104445 | | ||||| || || || ||||| | || || ||||| | ||||| | || Sbjct 149500 TGATATTAAGGATGATTCTATTTCTGGTATTTTTGACACCCTTACCCAATGTGCACTCAT 149559 Query 104446 CTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTC 104504 ||| || || || || || | ||| || || | | | ||| | || Sbjct 149560 TAGTAAGACAGCAGGAGGGATAGGTTTAGCA-ATACACAAAATACGTGCCTCCAGTTCAT 149618 Query 104505 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 104564 ||||| || |||||||| || || |||| ||||| || ||||| | |||| || | Sbjct 149619 ACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTATGCTCAGAATATTCAATG 149678 Query 104565 CCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATC 104621 || || || ||||| |||| | ||| | |||| || || | || |||| | Sbjct 149679 ATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAGGTTCATTTGCCATCTACC 149738 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681 | ||||||||||| || ||||| | || ||||| || | || ||||| ||| | Sbjct 149739 TAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTACGAAAAAACCATGGTTCAG 149798 Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||||| | || | || | |||| || | ||||| ||||| || |||||||| | Sbjct 149799 AGGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGATCCCAGACCTTTTCATGAAAA 149858 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 | ||||| | | || || ||| || | | || ||||| Sbjct 149859 GGGTTGAAGCTAATGAAAACTGGACTTTGATGTGCCCAGA 149898 >seq249 Length=435716 Score = 100 bits (110), Expect = 3e-16 Identities = 283/424 (67%), Gaps = 18/424 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || ||||| | ||||| || |||| || ||||| | ||||| | || || ||| Sbjct 312810 TCTAGTATATCTGCACGATTAGTACCGGCCATCACAACTACACCTGATG-ATGATTTAAA 312868 Query 9617 -CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG-----CT 9670 |||||||| ||| ||||| ||| || | || | ||||| |||||| || | | Sbjct 312869 GCCATCCATTTCTACCAAAATTTGATTTAATGTATTTTCCCTTTCATCGTTAGAACCACC 312928 Query 9671 GGCATA-CCACCAG-CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 |||| | || || | || | || ||| || | |||||| || |||||||| |||| | Sbjct 312929 GGCAAAGCCTCCTCTCGCT-CTTTTCTTACCAATGGCATCTATTTCATCAATAAAGATTA 312987 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 | | || ||||| | ||| ||||| ||||||| |||||| ||| ||| | || Sbjct 312988 TTGAAGGGGCATTTTTTCTAGCATTCTCAAATAGATCCCTTACACGACTGGGGCCGATAC 313047 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATTAGATTCA 9847 |||| || | ||| | || | || | || || | | ||| || || | | ||| Sbjct 313048 CAACGAATACCTCAATGAAATCTGATCCAGAT-ATGGAGTAGAATGGAACTTGGGCTTCC 313106 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || |||| || ||| ||||| || ||||||||||| || || || || || Sbjct 313107 CCGGCAACAGCCTTGGCAAGAAGCGTTTTACCCGTACCAGGAGGTCCACAAAGCAGTGCG 313166 Query 9908 CCTCGTGGAATCTTGGCGCC---ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| || |||||||| |||| || |||| || || | || |||||||| Sbjct 313167 CCTTTTGGTATTTTGGCGCCCAAACTTTTAA---ATCTTTCTGGATTTTTGAGAAAATCT 313223 Query 9965 ACAA 9968 |||| Sbjct 313224 ACAA 313227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258977310000