Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq241 95.1 1e-14 seq236 86.0 7e-12 seq231 86.0 7e-12 seq180 86.0 7e-12 >seq241 Length=536494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 20630 TACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGC 20689 |||| ||||||||||| ||| ||||||| || || |||||||| |||||||||||| Sbjct 150973 TACAAAACCGTATGGGAGATCAAACAGAAGGCGATAATTGACATGGCAGCCGATCGCGGC 151032 Query 20690 GCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAG 20749 |||| ||| |||||||| || ||||| || | | |||||| | || | || ||| Sbjct 151033 GCCTTCATTGACCAGTCTCAATCGCTGAACATTTACATGGAACAGCCTACATATGCCAAG 151092 Query 20750 CTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTG 20809 || ||||| | || |||||| | || || || || || || | || ||| || Sbjct 151093 TTGTCTAGTATGCACTTTTATGGCTGGAAGAAAGGACTAAAAACTGGAGTATATTATTTG 151152 Query 20810 CGGACCC 20816 || |||| Sbjct 151153 CGCACCC 151159 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 19424 CCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 || |||||| | | ||||| | || || | || || | ||||| || || ||| | Sbjct 149657 CCTATGCTCAGAATATTCAATGATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGA 149716 Query 19484 AAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || || || || ||||||||||| ||||||||||| || || | | || ||||| || Sbjct 149717 AAAGGTTCATTTGCCATCTACCTAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGAT 149776 Query 19544 CTGCGCCTGAACCAGGGTGACGAGGAG--ATGCGCTGTCGCGACCTCTTCACGGCCTTGT 19601 || || ||||| ||| |||||| | | || | | ||| | ||| || |||| Sbjct 149777 CTACGAAAAAACCATGGTTCAGAGGAGTCAAGGGC--TAGGGACTTGTTCTATGCATTGT 149834 Query 19602 GGATTCCGGACCTATTCATGGAGAAGGTTGA 19632 |||| || ||||| |||||| | | |||||| Sbjct 149835 GGATCCCAGACCTTTTCATGAAAAGGGTTGA 149865 >seq236 Length=138068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||||||||| || || || || ||||| || || || ||||| ||||| || || Sbjct 115490 GTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCATATTTTGGCTGAAAAAACGCGGG 115431 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAG 60122 |||||||| || || | || |||||||| || || ||| |||||||||| || || Sbjct 115430 CTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCAGGGACGAGGGTCTACACGCC 115371 Query 60123 GAGTTTG 60129 ||||||| Sbjct 115370 GAGTTTG 115364 >seq231 Length=443877 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||||||||| || || || || ||||| || || || ||||| ||||| || || Sbjct 402263 GTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCATATTTTGGCTGAAAAAACGCGGG 402322 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAG 60122 |||||||| || || | || |||||||| || || ||| |||||||||| || || Sbjct 402323 CTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCAGGGACGAGGGTCTACACGCC 402382 Query 60123 GAGTTTG 60129 ||||||| Sbjct 402383 GAGTTTG 402389 >seq180 Length=127670 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||||||||| || || || || ||||| || || || ||||| ||||| || || Sbjct 22579 GTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCATATTTTGGCTGAAAAAACGCGGG 22638 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAG 60122 |||||||| || || | || |||||||| || || ||| |||||||||| || || Sbjct 22639 CTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCAGGGACGAGGGTCTACACGCC 22698 Query 60123 GAGTTTG 60129 ||||||| Sbjct 22699 GAGTTTG 22705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523085860000