Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq237 129 5e-25 >seq237 Length=221212 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 74321 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74262 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 74261 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74202 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 74201 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 74142 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 74141 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 74085 Query 27228 TTTGTAA 27234 ||||||| Sbjct 74084 TTTGTAA 74078 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 74549 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74490 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 74489 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74430 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 74429 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 74370 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 74369 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 74313 Query 27228 TTTGTAA 27234 ||||||| Sbjct 74312 TTTGTAA 74306 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 74777 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74718 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 74717 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74658 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 74657 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 74598 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 74597 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 74541 Query 27228 TTTGTAA 27234 ||||||| Sbjct 74540 TTTGTAA 74534 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 75005 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74946 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 74945 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 74886 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 74885 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 74826 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 74825 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 74769 Query 27228 TTTGTAA 27234 ||||||| Sbjct 74768 TTTGTAA 74762 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 75233 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 75174 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 75173 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 75114 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 75113 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 75054 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 75053 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 74997 Query 27228 TTTGTAA 27234 ||||||| Sbjct 74996 TTTGTAA 74990 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 75461 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 75402 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 75401 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 75342 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 75341 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 75282 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 75281 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 75225 Query 27228 TTTGTAA 27234 ||||||| Sbjct 75224 TTTGTAA 75218 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 75689 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 75630 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 75629 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 75570 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 75569 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 75510 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 75509 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 75453 Query 27228 TTTGTAA 27234 ||||||| Sbjct 75452 TTTGTAA 75446 Score = 129 bits (142), Expect = 5e-25 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 75917 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 75858 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 75857 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 75798 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 75797 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 75738 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 || |||||||| ||||| | || || || || | || | ||||| || |||| | Sbjct 75737 ATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGAAT-GCAAATA-- 75681 Query 27228 TTTGTAA 27234 ||||||| Sbjct 75680 TTTGTAA 75674 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| || || || || | || || ||||| |||||||| Sbjct 74093 ATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAGT 74034 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| || || || || ||||||||| Sbjct 74033 GATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCAA 73974 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || |||| | || || ||||||||||| ||| || || |||| ||||| ||| Sbjct 73973 CAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTATAAC 73914 Query 27168 ATTCAAAAGGAGTCGAC 27184 || |||||||| ||||| Sbjct 73913 ATACAAAAGGAATCGAC 73897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917040880000