Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq237 118 7e-22 seq183 113 3e-20 >seq237 Length=221212 Score = 118 bits (130), Expect = 7e-22 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 || || | |||||||| || || || ||||| || ||||| ||||| || || || || | Sbjct 75928 AACTAGTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGG 75869 Query 23660 TTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719 | || | | || ||| |||||| |||| || ||| ||||| || || | | Sbjct 75868 TGGAACCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTC 75809 Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTT 23777 | || |||||||| || |||| ||||| || |||||| |||| |||| || |||||| Sbjct 75808 CCCCCGATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTT 75749 Query 23778 AGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | |||| ||||||||||| || || || | || ||||| |||||| || |||| || Sbjct 75748 CAG--ATTATAACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGG 75691 Query 23838 A 23838 | Sbjct 75690 A 75690 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 74094 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74035 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 74034 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 73975 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 73974 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 73917 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 73916 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 73866 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 74322 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74263 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 74262 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74203 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 74202 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 74145 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 74144 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 74094 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 74550 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74491 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 74490 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74431 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 74430 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 74373 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 74372 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 74322 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 74778 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74719 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 74718 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74659 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 74658 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 74601 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 74600 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 74550 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 75006 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 74947 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 74946 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 74887 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 74886 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 74829 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 74828 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 74778 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 75234 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75175 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 75174 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75115 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 75114 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 75057 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 75056 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 75006 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 75462 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75403 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 75402 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75343 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 75342 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 75285 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 75284 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 75234 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || ||||| ||||| || || || || || || | | Sbjct 75690 AATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACCTAG 75631 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| |||| || ||| ||||| || || | || || ||||| Sbjct 75630 TGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGATCA 75571 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||| || |||| ||||| || |||||| |||| |||| || |||||| | |||| Sbjct 75570 ACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAG--ATTAT 75513 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||||||| || || || | || ||||| |||||| || |||| ||| Sbjct 75512 AACATACAAAAGGAATCGACGCTTCACTTAGTGTTAAGGCTGAGAGGTGGA 75462 >seq183 Length=66479 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| |||||||| ||||| ||||| | ||||| || ||| Sbjct 26811 ATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAGT 26752 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | |||| | |||| | || | || || || || || | || || ||||| Sbjct 26751 GATACTATCGAAAATGTTAAGGCTAAGA-TTCAGGATAAGGAGGGAATTCCACCTGATCA 26693 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || ||||| || || ||||| ||||||| |||||| | || ||||| Sbjct 26692 ACAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAA 26633 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||||||||| || || ||||| || || || || || || ||| Sbjct 26632 TATTCAAAAAGAGTCTACTTTGCATTTGGTGTTGAGATTACGCGGTGGA 26584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008570127000