Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq241 170 3e-37 seq236 87.8 2e-12 seq231 87.8 2e-12 seq180 87.8 2e-12 >seq241 Length=536494 Score = 170 bits (188), Expect = 3e-37 Identities = 682/1062 (64%), Gaps = 20/1062 (2%) Strand=Plus/Minus Query 77424 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAA 77483 ||||||||||| ||||| | ||| | || | || || | ||||| ||||| Sbjct 150447 TAAATTGTTTCAAAAATTCTGACATTCAATTCACGGGCCTCCTGAGATTCAAAAGGATAG 150388 Query 77484 TGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTC 77543 | | ||| || || | ||| ||||||||||||||||| | ||| || || ||||||||| Sbjct 150387 CGCATAAGCATGAAAGTATCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTC 150328 Query 77544 TTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGA 77603 || || ||| || ||| || |||| ||| |||||||| |||||||||| |||| | | Sbjct 150327 TTGTTAGAATATTCAGCCTCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAA 150268 Query 77604 TTTCTAACAACTA-CTT-TAACCACGTCCT--TTAGTTTAAG--AAAATCAAATCTTCCA 77657 || | || || ||| || || | | | || ||| ||| || | || | Sbjct 150267 TTGAAAGTAAGTATCTTGCAAGCAGAATGTAATAACTTAAAGTCAAATTCGAGAGTTTTA 150208 Query 77658 TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCG 77717 | ||| || | ||| |||| || || || ||||| ||||| || ||||||| Sbjct 150207 GTGTTTACATACTTTGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGA 150148 Query 77718 TTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGT 77777 | |||||| | |||||| |||| || ||| | || ||||| || | || | Sbjct 150147 GATGTATATTGCACAATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTC 150088 Query 77778 TGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATC 77837 || || ||| | ||| || | |||||| || | || | ||||| || |||||||| Sbjct 150087 TGATTTGACTTGTAATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATT 150028 Query 77838 TGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCT- 77896 || |||| | |||| ||| | | | || | | |||| | | | Sbjct 150027 TGCGATTGTAAGATAGCAAACCAAAGGGTTTGCGC---GGGAACTGTTTTGCGACCCATG 149971 Query 77897 -CTCTC-TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 || || ||||| ||| |||| ||||||||| ||||||||||| | ||| | | Sbjct 149970 CCTTTCGACTCATAACTAGTGTATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGT 149911 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || || |||| |||||||||||| | ||||| ||| | | ||| | |||||| Sbjct 149910 CCTCTACACTCATCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATG 149851 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || || || || ||||| | ||| || | || | | || || || || Sbjct 149850 AAAAGGTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCA 149791 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || ||| ||||| || || || | |||||||| ||||||||| ||||| || || Sbjct 149790 TGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATG 149731 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | || || ||| ||||||||||| | ||| | || || | ||| | Sbjct 149730 GCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAAT 149671 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 | ||| | ||| || ||||| || || || |||||||| || ||| || | | Sbjct 149670 ATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAA 149614 Query 78255 CT---TGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 || || || || || || | || ||||| |||||||| ||||| || || Sbjct 149613 CTGGAGGCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGT 149554 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || | | | || || | ||||| ||| |||||| | || | |||||| Sbjct 149553 GCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGG 149494 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 || ||||||||||||||| || |||||| | || || | ||| |||| || || Sbjct 149493 AAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGG 149434 Query 78432 GTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGC 78472 |||| |||| | || | ||| |||||| || || || || Sbjct 149433 ATAAATAATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 149393 >seq236 Length=138068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| ||||| |||| || || ||||| || || || |||| |||||| |||| Sbjct 115352 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 115411 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCA 48251 | || || |||||||| || || |||||||| |||||||||| || ||| ||| | || Sbjct 115412 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATA-TGGCGCAGAAGCTACCC 115470 Query 48252 GAAAAGAATATGCCTTCTACGGCCG 48276 ||||| || || ||||| || |||| Sbjct 115471 GAAAATAAAATTCCTTCCACTGCCG 115495 >seq231 Length=443877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| ||||| |||| || || ||||| || || || |||| |||||| |||| Sbjct 402401 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 402342 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCA 48251 | || || |||||||| || || |||||||| |||||||||| || ||| ||| | || Sbjct 402341 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATA-TGGCGCAGAAGCTACCC 402283 Query 48252 GAAAAGAATATGCCTTCTACGGCCG 48276 ||||| || || ||||| || |||| Sbjct 402282 GAAAATAAAATTCCTTCCACTGCCG 402258 >seq180 Length=127670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| ||||| |||| || || ||||| || || || |||| |||||| |||| Sbjct 22717 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 22658 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCA 48251 | || || |||||||| || || |||||||| |||||||||| || ||| ||| | || Sbjct 22657 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATA-TGGCGCAGAAGCTACCC 22599 Query 48252 GAAAAGAATATGCCTTCTACGGCCG 48276 ||||| || || ||||| || |||| Sbjct 22598 GAAAATAAAATTCCTTCCACTGCCG 22574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666629160000