Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650075.1_202016-05-23] 250 sequences; 6,800,559 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq183 102 8e-17 seq237 87.8 2e-12 >seq183 Length=66479 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||| | ||||||| ||||| || ||| || ||||| || ||||| || Sbjct 26585 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 26644 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || || ||||| || || || ||||| || ||||| || | ||| Sbjct 26645 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 26704 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | ||| | | ||| || || | ||| || Sbjct 26705 ATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 26763 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||||||||| || || || || || || ||||| Sbjct 26764 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 26811 >seq237 Length=221212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 75705 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 75764 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 75765 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 75824 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 75825 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75883 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||||| || || ||||| || || ||||| || Sbjct 75884 TTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTT 75920 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 73881 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 73940 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 73941 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 74000 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 74001 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74059 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 74060 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74093 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 74109 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 74168 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 74169 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 74228 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 74229 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74287 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 74288 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74321 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 74337 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 74396 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 74397 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 74456 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 74457 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74515 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 74516 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74549 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 74565 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 74624 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 74625 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 74684 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 74685 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74743 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 74744 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 74777 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 74793 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 74852 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 74853 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 74912 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 74913 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 74971 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 74972 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75005 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 75021 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 75080 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 75081 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 75140 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 75141 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75199 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 75200 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75233 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 75249 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 75308 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 75309 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 75368 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 75369 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75427 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 75428 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75461 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 |||||| | || ||||| ||||| || |||||||| || || || || || |||| Sbjct 75477 TAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTC 75536 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || | || || || || || || || || ||||| || | ||||| | ||||||||| Sbjct 75537 CTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTC 75596 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || || | || || ||| || || | |||||||| | ||||| | Sbjct 75597 T-TGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGG 75655 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||||| || || ||||| || || ||||| Sbjct 75656 TTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 75689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302555300000