Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq125 134 1e-26 seq37 134 1e-26 seq33 134 1e-26 seq32 134 1e-26 seq56 122 8e-23 seq65 93.3 4e-14 >seq125 Length=210264 Score = 134 bits (148), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| |||| | || ||||||| |||||||||||||| | || ||| Sbjct 52114 TCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCAGTT 52055 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || ||| ||||| ||| | |||||||| || || |||| | | || || || | Sbjct 52054 TTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGCTGT 51995 Query 132999 GCGACAAATAAAT--TCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || ||||| ||||||||||| ||| || ||||| | | || ||||| |||| Sbjct 51994 TC--CATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCCA 51937 Query 133057 TGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 ||| ||||| ||| ||||||||||||| | || ||| | |||||||| | | | Sbjct 51936 TGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCTT 51877 Query 133117 GTGGTATTTCGTCAATGTTCTG 133138 |||||||||| || ||||| || Sbjct 51876 GTGGTATTTCATCGATGTTTTG 51855 >seq37 Length=216676 Score = 134 bits (148), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| |||| | || ||||||| |||||||||||||| | || ||| Sbjct 82042 TCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCAGTT 82101 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || ||| ||||| ||| | |||||||| || || |||| | | || || || | Sbjct 82102 TTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGCTGT 82161 Query 132999 GCGACAAATAAAT--TCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || ||||| ||||||||||| ||| || ||||| | | || ||||| |||| Sbjct 82162 TC--CATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCCA 82219 Query 133057 TGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 ||| ||||| ||| ||||||||||||| | || ||| | |||||||| | | | Sbjct 82220 TGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCTT 82279 Query 133117 GTGGTATTTCGTCAATGTTCTG 133138 |||||||||| || ||||| || Sbjct 82280 GTGGTATTTCATCGATGTTTTG 82301 >seq33 Length=143971 Score = 134 bits (148), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| |||| | || ||||||| |||||||||||||| | || ||| Sbjct 52114 TCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCAGTT 52055 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || ||| ||||| ||| | |||||||| || || |||| | | || || || | Sbjct 52054 TTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGCTGT 51995 Query 132999 GCGACAAATAAAT--TCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || ||||| ||||||||||| ||| || ||||| | | || ||||| |||| Sbjct 51994 TC--CATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCCA 51937 Query 133057 TGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 ||| ||||| ||| ||||||||||||| | || ||| | |||||||| | | | Sbjct 51936 TGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCTT 51877 Query 133117 GTGGTATTTCGTCAATGTTCTG 133138 |||||||||| || ||||| || Sbjct 51876 GTGGTATTTCATCGATGTTTTG 51855 >seq32 Length=149697 Score = 134 bits (148), Expect = 1e-26 Identities = 188/262 (72%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || || |||||||| |||| | || ||||||| |||||||||||||| | || ||| Sbjct 67656 TCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCAGTT 67597 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || ||| ||||| ||| | |||||||| || || |||| | | || || || | Sbjct 67596 TTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGCTGT 67537 Query 132999 GCGACAAATAAAT--TCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCA 133056 | || ||||| ||||||||||| ||| || ||||| | | || ||||| |||| Sbjct 67536 TC--CATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCCA 67479 Query 133057 TGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCT 133116 ||| ||||| ||| ||||||||||||| | || ||| | |||||||| | | | Sbjct 67478 TGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCTT 67419 Query 133117 GTGGTATTTCGTCAATGTTCTG 133138 |||||||||| || ||||| || Sbjct 67418 GTGGTATTTCATCGATGTTTTG 67397 >seq56 Length=83948 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||||||||||||||| || | ||||||||||||||||| ||||| || | Sbjct 38190 CCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGAC 38131 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| || || || || || ||||| | || || || || ||||| || || Sbjct 38130 AGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGA 38071 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| || ||| || ||||| | ||||| || || || ||| || Sbjct 38070 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACT 38011 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || || ||||| ||||| || ||||| Sbjct 38010 TCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 37964 >seq65 Length=192560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 || ||||| ||||| | || || || ||||| ||||| ||||| | | |||| || Sbjct 118679 CTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATC--TGAAAGTGTACGAC 118622 Query 118584 --TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCT 118641 ||||| | ||||||||||| | || || || || |||||||| || || ||||||| Sbjct 118621 CGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCT 118562 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| ||| || || || | ||| | || || | || ||||| | ||| | Sbjct 118561 TGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTA 118502 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || ||||||||||| || ||||| Sbjct 118501 TGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 118465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829659776880