Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq56 122 1e-22 seq65 89.7 6e-13 >seq56 Length=83948 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | ||| | ||||||||||||||| || ||| |||||||||||||| || | Sbjct 38191 TCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGA 38132 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || |||| ||||| ||||||||||| || || ||||| || || || | || Sbjct 38131 CAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGG 38072 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||| ||| ||| | || | || | | | | || || || | || | Sbjct 38071 AATTCCCTCCTTATCC-TGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTA 38013 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| ||||| || || || ||||| |||||||| Sbjct 38012 CTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 37964 >seq65 Length=192560 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || || ||||| | || || || |||| || | || || ||||| || Sbjct 118655 TCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAA 118596 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || ||||| || || |||| || | | ||||||||| ||| | || | || | | Sbjct 118595 ATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCT-TGAATCTTAGCCTTTACATT 118537 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || || | |||||| || | || |||||||| ||||| || || ||||| Sbjct 118536 TTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTAC 118477 Query 43172 AAAGATTTGCATTTTTAC 43189 ||| |||||||||||||| Sbjct 118476 AAATATTTGCATTTTTAC 118459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816599319200