Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq65 145 6e-30 seq56 140 3e-28 seq125 109 5e-19 seq37 109 5e-19 seq33 109 5e-19 seq32 109 5e-19 >seq65 Length=192560 Score = 145 bits (160), Expect = 6e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 ||||| |||||||| ||||| ||||| | || |||||||| | || ||||| |||||| Sbjct 118459 GTAAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAA 118518 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | ||||| | || || | || || ||||||||||||||||| ||||| ||| Sbjct 118519 CCTAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCC 118578 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||||||||| || || ||||| || ||||| || ||||| || || | || ||| Sbjct 118579 GATCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGAT 118638 Query 22393 TACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || ||||| ||||| ||||| || | || ||||| || Sbjct 118639 TATAACATACAAAAGGAATCGACGCTTCACTTAGTGTT 118676 >seq56 Length=83948 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || |||||||| |||| | ||||| || ||| Sbjct 37964 ATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAGT 38023 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| || |||||||| |||||||| |||||| Sbjct 38024 GATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGATCAA 38083 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || || || |||| || |||||| | || || ||||| Sbjct 38084 CAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAAT 38143 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || || | ||||| || ||| |||| ||||| || Sbjct 38144 ATTCAAAAAGAGTCTACTTTGCATTTGGTGTTGAGATTACGCGGTGG 38190 >seq125 Length=210264 Score = 109 bits (120), Expect = 5e-19 Identities = 287/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||| || || || || || || || | |||||||||||| || | || Sbjct 52117 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 52058 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | || | ||||| | | ||| || | | |||| || || || || Sbjct 52057 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 51998 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 || || |||| || | |||||| || ||||| |||| |||||||||||| ||| Sbjct 51997 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 51938 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||| | ||| ||| || ||||| || |||||||| || | | | | | Sbjct 51937 ATGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCT 51878 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAAT--AATTTTGTTTCGCA 129076 | ||||||||| || ||||| || | || || || | |||||| | |||||||| || Sbjct 51877 TGTGGTATTTCATCGATGTTTTGTAAACTTCCATTATATGCAATTAATTTTTGTTT--CA 51820 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTG---TTTATTA 129133 | || || || | | || || || | |||||| | |||| | | | |||| | Sbjct 51819 TTTGGTCATTCCAGAGATCCAATTGAACCAAATCAT---TCAATAAATGGGGATTTACAA 51763 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 | ||| || || | | ||||| ||| ||||| ||| ||| | || ||||| | Sbjct 51762 CGAAAAATTCGCCAGAAAGGACGCGACGATAATAAATATTGCAAGTGTAAGGTTCAAAAG 51703 Query 129194 ATTCATTGTTGCCTA 129208 |||| |||| |||| Sbjct 51702 ATTCGCTGTTTCCTA 51688 >seq37 Length=216676 Score = 109 bits (120), Expect = 5e-19 Identities = 287/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||| || || || || || || || | |||||||||||| || | || Sbjct 82039 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 82098 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | || | ||||| | | ||| || | | |||| || || || || Sbjct 82099 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 82158 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 || || |||| || | |||||| || ||||| |||| |||||||||||| ||| Sbjct 82159 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 82218 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||| | ||| ||| || ||||| || |||||||| || | | | | | Sbjct 82219 ATGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCT 82278 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAAT--AATTTTGTTTCGCA 129076 | ||||||||| || ||||| || | || || || | |||||| | |||||||| || Sbjct 82279 TGTGGTATTTCATCGATGTTTTGTAAACTTCCATTATATGCAATTAATTTTTGTTT--CA 82336 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTG---TTTATTA 129133 | || || || | | || || || | |||||| | |||| | | | |||| | Sbjct 82337 TTTGGTCATTCCAGAGATCCAATTGAACCAAATCAT---TCAATAAATGGGGATTTACAA 82393 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 | ||| || || | | ||||| ||| ||||| ||| ||| | || ||||| | Sbjct 82394 CGAAAAATTCGCCAGAAAGGACGCGACGATAATAAATATTGCAAGTGTAAGGTTCAAAAG 82453 Query 129194 ATTCATTGTTGCCTA 129208 |||| |||| |||| Sbjct 82454 ATTCGCTGTTTCCTA 82468 >seq33 Length=143971 Score = 109 bits (120), Expect = 5e-19 Identities = 287/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||| || || || || || || || | |||||||||||| || | || Sbjct 52117 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 52058 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | || | ||||| | | ||| || | | |||| || || || || Sbjct 52057 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 51998 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 || || |||| || | |||||| || ||||| |||| |||||||||||| ||| Sbjct 51997 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 51938 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||| | ||| ||| || ||||| || |||||||| || | | | | | Sbjct 51937 ATGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCT 51878 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAAT--AATTTTGTTTCGCA 129076 | ||||||||| || ||||| || | || || || | |||||| | |||||||| || Sbjct 51877 TGTGGTATTTCATCGATGTTTTGTAAACTTCCATTATATGCAATTAATTTTTGTTT--CA 51820 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTG---TTTATTA 129133 | || || || | | || || || | |||||| | |||| | | | |||| | Sbjct 51819 TTTGGTCATTCCAGAGATCCAATTGAACCAAATCAT---TCAATAAATGGGGATTTACAA 51763 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 | ||| || || | | ||||| ||| ||||| ||| ||| | || ||||| | Sbjct 51762 CGAAAAATTCGCCAGAAAGGACGCGACGATAATAAATATTGCAAGTGTAAGGTTCAAAAG 51703 Query 129194 ATTCATTGTTGCCTA 129208 |||| |||| |||| Sbjct 51702 ATTCGCTGTTTCCTA 51688 >seq32 Length=149697 Score = 109 bits (120), Expect = 5e-19 Identities = 287/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || || || ||||| || || || || || || || | |||||||||||| || | || Sbjct 67659 TTATCTACTGTAAACTTGATGGCATCGGCAGCGGGTTGGGTGCGCAAATAATATACTCCA 67600 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | || | ||||| | | ||| || | | |||| || || || || Sbjct 67599 GTTTTTAGTCCTTTCTTCCAGCCATAAAAGTGCATACTAGACAACTTGGCATATGTAGGC 67540 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 || || |||| || | |||||| || ||||| |||| |||||||||||| ||| Sbjct 67539 TGTTCCATGTAAATGTTCAGCGATTGAGACTGGTCAATGAAGGCGCCGCGATCGGCTGCC 67480 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||| | ||| ||| || ||||| || |||||||| || | | | | | Sbjct 67479 ATGTCAATTATCGCCTTCTGTTTGATCTCCCATACGGTTTTGTACAGATTCTTTAGCTCT 67420 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAAT--AATTTTGTTTCGCA 129076 | ||||||||| || ||||| || | || || || | |||||| | |||||||| || Sbjct 67419 TGTGGTATTTCATCGATGTTTTGTAAACTTCCATTATATGCAATTAATTTTTGTTT--CA 67362 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTG---TTTATTA 129133 | || || || | | || || || | |||||| | |||| | | | |||| | Sbjct 67361 TTTGGTCATTCCAGAGATCCAATTGAACCAAATCAT---TCAATAAATGGGGATTTACAA 67305 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 | ||| || || | | ||||| ||| ||||| ||| ||| | || ||||| | Sbjct 67304 CGAAAAATTCGCCAGAAAGGACGCGACGATAATAAATATTGCAAGTGTAAGGTTCAAAAG 67245 Query 129194 ATTCATTGTTGCCTA 129208 |||| |||| |||| Sbjct 67244 ATTCGCTGTTTCCTA 67230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727283839100