Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq125 93.3 4e-14 seq37 93.3 4e-14 seq33 93.3 4e-14 seq32 93.3 4e-14 >seq125 Length=210264 Score = 93.3 bits (102), Expect = 4e-14 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 94055 TACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTA 94114 |||||||| |||| ||||| ||||| || ||||| ||||| || | | |||| Sbjct 50522 TACGTGCCTCCAGTTCATACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTA 50581 Query 94115 TGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGG 94174 ||||| | | ||||| | | || || || || || ||||| || || | || || | Sbjct 50582 TGCTCAGAATATTCAATGATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAG 50641 Query 94175 GTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGC 94234 |||| || || |||| || ||||| ||||| || || | | ||| | || || | Sbjct 50642 GTTCATTTGCCATCTACCTAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTAC 50701 Query 94235 GAAAGAACCACGGCAACGATCTGGAG---AGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291 |||| ||||| || || |||| ||||| || ||| | ||||| || | ||| Sbjct 50702 GAAAAAACCATGGTTCAGA---GGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGA 50758 Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGA 94319 | ||||||||||| |||||| | || || Sbjct 50759 TCCCAGACCTTTTCATGAAAAGGGTTGA 50786 >seq37 Length=216676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 94055 TACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTA 94114 |||||||| |||| ||||| ||||| || ||||| ||||| || | | |||| Sbjct 83634 TACGTGCCTCCAGTTCATACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTA 83575 Query 94115 TGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGG 94174 ||||| | | ||||| | | || || || || || ||||| || || | || || | Sbjct 83574 TGCTCAGAATATTCAATGATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAG 83515 Query 94175 GTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGC 94234 |||| || || |||| || ||||| ||||| || || | | ||| | || || | Sbjct 83514 GTTCATTTGCCATCTACCTAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTAC 83455 Query 94235 GAAAGAACCACGGCAACGATCTGGAG---AGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291 |||| ||||| || || |||| ||||| || ||| | ||||| || | ||| Sbjct 83454 GAAAAAACCATGGTTCAGA---GGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGA 83398 Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGA 94319 | ||||||||||| |||||| | || || Sbjct 83397 TCCCAGACCTTTTCATGAAAAGGGTTGA 83370 >seq33 Length=143971 Score = 93.3 bits (102), Expect = 4e-14 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 94055 TACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTA 94114 |||||||| |||| ||||| ||||| || ||||| ||||| || | | |||| Sbjct 50522 TACGTGCCTCCAGTTCATACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTA 50581 Query 94115 TGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGG 94174 ||||| | | ||||| | | || || || || || ||||| || || | || || | Sbjct 50582 TGCTCAGAATATTCAATGATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAG 50641 Query 94175 GTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGC 94234 |||| || || |||| || ||||| ||||| || || | | ||| | || || | Sbjct 50642 GTTCATTTGCCATCTACCTAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTAC 50701 Query 94235 GAAAGAACCACGGCAACGATCTGGAG---AGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291 |||| ||||| || || |||| ||||| || ||| | ||||| || | ||| Sbjct 50702 GAAAAAACCATGGTTCAGA---GGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGA 50758 Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGA 94319 | ||||||||||| |||||| | || || Sbjct 50759 TCCCAGACCTTTTCATGAAAAGGGTTGA 50786 >seq32 Length=149697 Score = 93.3 bits (102), Expect = 4e-14 Identities = 182/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 94055 TACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTA 94114 |||||||| |||| ||||| ||||| || ||||| ||||| || | | |||| Sbjct 66064 TACGTGCCTCCAGTTCATACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTA 66123 Query 94115 TGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGG 94174 ||||| | | ||||| | | || || || || || ||||| || || | || || | Sbjct 66124 TGCTCAGAATATTCAATGATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAG 66183 Query 94175 GTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGC 94234 |||| || || |||| || ||||| ||||| || || | | ||| | || || | Sbjct 66184 GTTCATTTGCCATCTACCTAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTAC 66243 Query 94235 GAAAGAACCACGGCAACGATCTGGAG---AGGGCCAGAGACCTCTTCTACGCTCTCTGGG 94291 |||| ||||| || || |||| ||||| || ||| | ||||| || | ||| Sbjct 66244 GAAAAAACCATGGTTCAGA---GGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGA 66300 Query 94292 TGCCAGACCTTTTTATGAAACGCGTCGA 94319 | ||||||||||| |||||| | || || Sbjct 66301 TCCCAGACCTTTTCATGAAAAGGGTTGA 66328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722334234400