Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq125 118 1e-21 seq37 118 1e-21 seq33 118 1e-21 seq32 118 1e-21 seq41 86.0 7e-12 >seq125 Length=210264 Score = 118 bits (130), Expect = 1e-21 Identities = 322/487 (66%), Gaps = 7/487 (1%) Strand=Plus/Minus Query 106784 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 106843 ||||||| ||||||||||||||||| ||||||| | | || | || ||| || Sbjct 50786 TCAACCCTTTTCATGAAAAGGTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTT 50727 Query 106844 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 106903 | ||| || ||| ||||| ||||| || ||||| || | ||||| || |||||| Sbjct 50726 GACTCCTCTGAACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCAT 50667 Query 106904 GGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGC 106960 ||||| || |||| || | || || |||| | ||| | |||| ||||| || Sbjct 50666 GGCTCTAGGTAGATGGCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGA 50607 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 || || | || |||| | ||||| || ||||| |||| || || |||||||| || Sbjct 50606 GCAGTATCATTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 50547 Query 107021 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-ATCCCAATACCCCCAGCCCA 107079 ||||| || | ||| | | | || || ||| | || || || || || Sbjct 50546 CGAATGTATGAACTGGAGGCACGTATTTTGTGTAT-TGCTAAACCTATCCCTCCTGCTGT 50488 Query 107080 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT 107139 ||| || | ||||| | ||||| || || | ||||| || || || ||||| Sbjct 50487 CTTACTAATGAGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTT 50428 Query 107140 GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGT 107199 | | | ||||||||| || ||||| || || | || |||| |||||||| || Sbjct 50427 AATATCAAGAAGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGT 50368 Query 107200 TGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 || || ||||| || || || ||| |||||| | | ||| ||||||| | || || Sbjct 50367 GGGAGTGGCGTGGATAAATAATTTCTT-GGACATGTAATTGTAAGTCTCCATGGCACGAT 50309 Query 107259 CAATGTC 107265 |||| || Sbjct 50308 CAATATC 50302 >seq37 Length=216676 Score = 118 bits (130), Expect = 1e-21 Identities = 322/487 (66%), Gaps = 7/487 (1%) Strand=Plus/Plus Query 106784 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 106843 ||||||| ||||||||||||||||| ||||||| | | || | || ||| || Sbjct 83370 TCAACCCTTTTCATGAAAAGGTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTT 83429 Query 106844 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 106903 | ||| || ||| ||||| ||||| || ||||| || | ||||| || |||||| Sbjct 83430 GACTCCTCTGAACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCAT 83489 Query 106904 GGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGC 106960 ||||| || |||| || | || || |||| | ||| | |||| ||||| || Sbjct 83490 GGCTCTAGGTAGATGGCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGA 83549 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 || || | || |||| | ||||| || ||||| |||| || || |||||||| || Sbjct 83550 GCAGTATCATTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 83609 Query 107021 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-ATCCCAATACCCCCAGCCCA 107079 ||||| || | ||| | | | || || ||| | || || || || || Sbjct 83610 CGAATGTATGAACTGGAGGCACGTATTTTGTGTAT-TGCTAAACCTATCCCTCCTGCTGT 83668 Query 107080 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT 107139 ||| || | ||||| | ||||| || || | ||||| || || || ||||| Sbjct 83669 CTTACTAATGAGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTT 83728 Query 107140 GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGT 107199 | | | ||||||||| || ||||| || || | || |||| |||||||| || Sbjct 83729 AATATCAAGAAGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGT 83788 Query 107200 TGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 || || ||||| || || || ||| |||||| | | ||| ||||||| | || || Sbjct 83789 GGGAGTGGCGTGGATAAATAATTTCTT-GGACATGTAATTGTAAGTCTCCATGGCACGAT 83847 Query 107259 CAATGTC 107265 |||| || Sbjct 83848 CAATATC 83854 >seq33 Length=143971 Score = 118 bits (130), Expect = 1e-21 Identities = 322/487 (66%), Gaps = 7/487 (1%) Strand=Plus/Minus Query 106784 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 106843 ||||||| ||||||||||||||||| ||||||| | | || | || ||| || Sbjct 50786 TCAACCCTTTTCATGAAAAGGTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTT 50727 Query 106844 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 106903 | ||| || ||| ||||| ||||| || ||||| || | ||||| || |||||| Sbjct 50726 GACTCCTCTGAACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCAT 50667 Query 106904 GGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGC 106960 ||||| || |||| || | || || |||| | ||| | |||| ||||| || Sbjct 50666 GGCTCTAGGTAGATGGCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGA 50607 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 || || | || |||| | ||||| || ||||| |||| || || |||||||| || Sbjct 50606 GCAGTATCATTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 50547 Query 107021 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-ATCCCAATACCCCCAGCCCA 107079 ||||| || | ||| | | | || || ||| | || || || || || Sbjct 50546 CGAATGTATGAACTGGAGGCACGTATTTTGTGTAT-TGCTAAACCTATCCCTCCTGCTGT 50488 Query 107080 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT 107139 ||| || | ||||| | ||||| || || | ||||| || || || ||||| Sbjct 50487 CTTACTAATGAGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTT 50428 Query 107140 GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGT 107199 | | | ||||||||| || ||||| || || | || |||| |||||||| || Sbjct 50427 AATATCAAGAAGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGT 50368 Query 107200 TGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 || || ||||| || || || ||| |||||| | | ||| ||||||| | || || Sbjct 50367 GGGAGTGGCGTGGATAAATAATTTCTT-GGACATGTAATTGTAAGTCTCCATGGCACGAT 50309 Query 107259 CAATGTC 107265 |||| || Sbjct 50308 CAATATC 50302 >seq32 Length=149697 Score = 118 bits (130), Expect = 1e-21 Identities = 322/487 (66%), Gaps = 7/487 (1%) Strand=Plus/Minus Query 106784 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 106843 ||||||| ||||||||||||||||| ||||||| | | || | || ||| || Sbjct 66328 TCAACCCTTTTCATGAAAAGGTCTGGGATCCACAATGCATAGAACAAGTCCCTAGCCCTT 66269 Query 106844 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 106903 | ||| || ||| ||||| ||||| || ||||| || | ||||| || |||||| Sbjct 66268 GACTCCTCTGAACCATGGTTTTTTCGTAGATCTAGGAATTCAAAAATATCAGCATGCCAT 66209 Query 106904 GGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGC 106960 ||||| || |||| || | || || |||| | ||| | |||| ||||| || Sbjct 66208 GGCTCTAGGTAGATGGCAAATGAACCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGA 66149 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 || || | || |||| | ||||| || ||||| |||| || || |||||||| || Sbjct 66148 GCAGTATCATTGAATATTCTGAGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCG 66089 Query 107021 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC-ATCCCAATACCCCCAGCCCA 107079 ||||| || | ||| | | | || || ||| | || || || || || Sbjct 66088 CGAATGTATGAACTGGAGGCACGTATTTTGTGTAT-TGCTAAACCTATCCCTCCTGCTGT 66030 Query 107080 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT 107139 ||| || | ||||| | ||||| || || | ||||| || || || ||||| Sbjct 66029 CTTACTAATGAGTGCACATTGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTT 65970 Query 107140 GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGT 107199 | | | ||||||||| || ||||| || || | || |||| |||||||| || Sbjct 65969 AATATCAAGAAGGAAGCAGCTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGT 65910 Query 107200 TGGTGTTGCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 || || ||||| || || || ||| |||||| | | ||| ||||||| | || || Sbjct 65909 GGGAGTGGCGTGGATAAATAATTTCTT-GGACATGTAATTGTAAGTCTCCATGGCACGAT 65851 Query 107259 CAATGTC 107265 |||| || Sbjct 65850 CAATATC 65844 >seq41 Length=32257 Score = 86.0 bits (94), Expect = 7e-12 Identities = 282/428 (66%), Gaps = 18/428 (4%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 || || ||||| | ||||| || |||| || ||||| | ||||| | || || ||| Sbjct 16664 TCTAGTATATCTGCACGATTAGTACCGGCCATCACAACTACACCTGATG-ATGATTTAAA 16722 Query 9285 -CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG-----CT 9338 |||||||| ||| ||||| ||| || | || | ||||| |||||| || | | Sbjct 16723 GCCATCCATTTCTACCAAAATTTGATTTAATGTATTTTCCCTTTCATCGTTAGAACCACC 16782 Query 9339 GGCATA-CCACCAG-CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAA 9396 |||| | || || | || | || ||| || | |||||| || |||||||| |||| | Sbjct 16783 GGCAAAGCCTCCTCTCGCT-CTTTTCTTACCAATGGCATCTATTTCATCAATAAAGATTA 16841 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 | | || ||||| | || | ||||| ||||| | || | ||| ||| | || Sbjct 16842 TTGAAGGGGCATTTTTTCTAGCATTCTCAAATAGATCCCTTACACGACTGGGGCCGATAC 16901 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATTAGATTCA 9515 |||| || | ||| | || | || | || || | | ||| || || | | ||| Sbjct 16902 CAACGAATACCTCAATGAAATCTGATCCAGAT-ATGGAGTAGAATGGAACTTGGGCTTCC 16960 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || |||| || ||| ||||| || ||||||||||| || || || || || Sbjct 16961 CCGGCAACAGCCTTGGCAAGAAGCGTTTTACCCGTACCAGGAGGTCCACAAAGCAGTGCG 17020 Query 9576 CCCCGTGGAATCTTGGCGCC---ACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCC 9632 || ||| || |||||||| |||| || |||| || || | ||||||||||| Sbjct 17021 CCTTTTGGTATTTTGGCGCCCAAACTTTTAA---ATCTTTCTGGATTTTTGAGAAAATCT 17077 Query 9633 ACAATCTC 9640 |||| ||| Sbjct 17078 ACAAACTC 17085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979767533600