Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq65 203 6e-47 seq56 179 7e-40 >seq65 Length=192560 Score = 203 bits (224), Expect = 6e-47 Identities = 184/232 (79%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | | |||||||| || || ||||| || ||||| |||||||| || Sbjct 118691 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 118632 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||| || | ||||||||||||||| ||||||| ||||||||| || || Sbjct 118631 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 118572 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| ||||||||||| || |||||||||||||| |||||| ||||||| || Sbjct 118571 ATTCCCTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACC 118512 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || | ||||| || || || || | || ||||||||||| |||||| ||| Sbjct 118511 TCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTTTA 118460 >seq56 Length=83948 Score = 179 bits (198), Expect = 7e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || |||| |||||| ||||| || ||||| || || || ||| | | ||||||||| Sbjct 38172 ACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGACAGAGTGCGGCCGTCTTCT 38113 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || |||||||| || |||| ||||||||| || || ||||| |||||||| ||| Sbjct 38112 AGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGGAATTCCCTCCTTATCCTGA 38053 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || || |||||||| || |||||| | || ||||||||||| || || || || Sbjct 38052 ATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTACTTCCAATGTGATGGTTTTA 37993 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| ||||| Sbjct 37992 CCCGTGAGTGTTTTCACAAATATTTGCAT 37964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825438847460