Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq65 120 2e-22 seq56 100 2e-16 >seq65 Length=192560 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| | |||||| || || || || || ||||||||||| ||||| || Sbjct 118691 CCACCTCTCAGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAA 118632 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || |||| |||||||||||||| |||||||| | || || ||||| | || Sbjct 118631 AGTGTACGACCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGA 118572 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || | | |||| || | || || || | |||||| Sbjct 118571 ATTCCCTCCTTGTCTTGAATCTT-AGCCTTTACATTTTCAATAGTATCACTAGGTTCCAC 118513 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || |||||||| || | ||||||||||| || ||||| Sbjct 118512 CTCAAGGGTTATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCAT 118465 >seq56 Length=83948 Score = 100 bits (110), Expect = 2e-16 Identities = 170/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 33510 AATAAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTAT 33569 || ||| | ||| ||||| | || | ||||||||||| | ||| ||||||||| || Sbjct 38203 AAAAAATTAGTCTCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAAT 38144 Query 33570 GTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTG 33629 ||||| || || || ||||| |||| || | ||| || || |||||||||| || || Sbjct 38143 ATTGTAGTCTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTG 38084 Query 33630 CTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGT 33688 ||||| | || | || || || || ||| || | | ||||| || | || | Sbjct 38083 TTGATCAGGTGGAATTCCCTCCTTATCCTGAATCTT-AGCCTTAACATTTTCGATAGTAT 38025 Query 33689 CGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748 | || | || || || | ||||| |||||||| || | ||||| ||||| || |||| Sbjct 38024 CACTGGGCTCTACTTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCA 37965 Query 33749 TAGT 33752 |||| Sbjct 37964 TAGT 37961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703439148800