Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq125 105 8e-18 seq37 105 8e-18 seq33 105 8e-18 seq32 105 8e-18 seq41 100 3e-16 >seq125 Length=210264 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGC 104325 || |||||| || | ||||||| ||| | | |||||| ||| || || || ||||| Sbjct 50302 GATATTGATCGTGCCATGGAGACTTACAATTACATGTCC-AAGAAATTATTTATCCACGC 50360 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTAT 104385 || || || |||||||| |||| || | || |||||||| || ||||||||| | Sbjct 50361 CACTCCCACACTCTTCAACTCTGGAACTAAATTTCCTCAAATGTCTAGCTGCTTCCTTCT 50420 Query 104386 CGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAAT 104445 | | ||||| || || || ||||| | || || ||||| | ||||| | || Sbjct 50421 TGATATTAAGGATGATTCTATTTCTGGTATTTTTGACACCCTTACCCAATGTGCACTCAT 50480 Query 104446 CTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTC 104504 ||| || || || || || | ||| || || | | | ||| | || Sbjct 50481 TAGTAAGACAGCAGGAGGGATAGGTTTAGCA-ATACACAAAATACGTGCCTCCAGTTCAT 50539 Query 104505 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 104564 ||||| || |||||||| || || |||| ||||| || ||||| | |||| || | Sbjct 50540 ACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTATGCTCAGAATATTCAATG 50599 Query 104565 CCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATC 104621 || || || ||||| |||| | ||| | |||| || || | || |||| | Sbjct 50600 ATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAGGTTCATTTGCCATCTACC 50659 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681 | ||||||||||| || ||||| | || ||||| || | || ||||| ||| | Sbjct 50660 TAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTACGAAAAAACCATGGTTCAG 50719 Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||||| | || | || | |||| || | ||||| ||||| || |||||||| | Sbjct 50720 AGGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGATCCCAGACCTTTTCATGAAAA 50779 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 | ||||| | | || || ||| || | | || ||||| Sbjct 50780 GGGTTGAAGCTAATGAAAACTGGACTTTGATGTGCCCAGA 50819 >seq37 Length=216676 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGC 104325 || |||||| || | ||||||| ||| | | |||||| ||| || || || ||||| Sbjct 83854 GATATTGATCGTGCCATGGAGACTTACAATTACATGTCC-AAGAAATTATTTATCCACGC 83796 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTAT 104385 || || || |||||||| |||| || | || |||||||| || ||||||||| | Sbjct 83795 CACTCCCACACTCTTCAACTCTGGAACTAAATTTCCTCAAATGTCTAGCTGCTTCCTTCT 83736 Query 104386 CGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAAT 104445 | | ||||| || || || ||||| | || || ||||| | ||||| | || Sbjct 83735 TGATATTAAGGATGATTCTATTTCTGGTATTTTTGACACCCTTACCCAATGTGCACTCAT 83676 Query 104446 CTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTC 104504 ||| || || || || || | ||| || || | | | ||| | || Sbjct 83675 TAGTAAGACAGCAGGAGGGATAGGTTTAGCA-ATACACAAAATACGTGCCTCCAGTTCAT 83617 Query 104505 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 104564 ||||| || |||||||| || || |||| ||||| || ||||| | |||| || | Sbjct 83616 ACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTATGCTCAGAATATTCAATG 83557 Query 104565 CCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATC 104621 || || || ||||| |||| | ||| | |||| || || | || |||| | Sbjct 83556 ATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAGGTTCATTTGCCATCTACC 83497 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681 | ||||||||||| || ||||| | || ||||| || | || ||||| ||| | Sbjct 83496 TAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTACGAAAAAACCATGGTTCAG 83437 Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||||| | || | || | |||| || | ||||| ||||| || |||||||| | Sbjct 83436 AGGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGATCCCAGACCTTTTCATGAAAA 83377 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 | ||||| | | || || ||| || | | || ||||| Sbjct 83376 GGGTTGAAGCTAATGAAAACTGGACTTTGATGTGCCCAGA 83337 >seq33 Length=143971 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGC 104325 || |||||| || | ||||||| ||| | | |||||| ||| || || || ||||| Sbjct 50302 GATATTGATCGTGCCATGGAGACTTACAATTACATGTCC-AAGAAATTATTTATCCACGC 50360 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTAT 104385 || || || |||||||| |||| || | || |||||||| || ||||||||| | Sbjct 50361 CACTCCCACACTCTTCAACTCTGGAACTAAATTTCCTCAAATGTCTAGCTGCTTCCTTCT 50420 Query 104386 CGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAAT 104445 | | ||||| || || || ||||| | || || ||||| | ||||| | || Sbjct 50421 TGATATTAAGGATGATTCTATTTCTGGTATTTTTGACACCCTTACCCAATGTGCACTCAT 50480 Query 104446 CTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTC 104504 ||| || || || || || | ||| || || | | | ||| | || Sbjct 50481 TAGTAAGACAGCAGGAGGGATAGGTTTAGCA-ATACACAAAATACGTGCCTCCAGTTCAT 50539 Query 104505 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 104564 ||||| || |||||||| || || |||| ||||| || ||||| | |||| || | Sbjct 50540 ACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTATGCTCAGAATATTCAATG 50599 Query 104565 CCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATC 104621 || || || ||||| |||| | ||| | |||| || || | || |||| | Sbjct 50600 ATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAGGTTCATTTGCCATCTACC 50659 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681 | ||||||||||| || ||||| | || ||||| || | || ||||| ||| | Sbjct 50660 TAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTACGAAAAAACCATGGTTCAG 50719 Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||||| | || | || | |||| || | ||||| ||||| || |||||||| | Sbjct 50720 AGGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGATCCCAGACCTTTTCATGAAAA 50779 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 | ||||| | | || || ||| || | | || ||||| Sbjct 50780 GGGTTGAAGCTAATGAAAACTGGACTTTGATGTGCCCAGA 50819 >seq32 Length=149697 Score = 105 bits (116), Expect = 8e-18 Identities = 339/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Plus Query 104267 GACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGC 104325 || |||||| || | ||||||| ||| | | |||||| ||| || || || ||||| Sbjct 65844 GATATTGATCGTGCCATGGAGACTTACAATTACATGTCC-AAGAAATTATTTATCCACGC 65902 Query 104326 AACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTAT 104385 || || || |||||||| |||| || | || |||||||| || ||||||||| | Sbjct 65903 CACTCCCACACTCTTCAACTCTGGAACTAAATTTCCTCAAATGTCTAGCTGCTTCCTTCT 65962 Query 104386 CGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAAT 104445 | | ||||| || || || ||||| | || || ||||| | ||||| | || Sbjct 65963 TGATATTAAGGATGATTCTATTTCTGGTATTTTTGACACCCTTACCCAATGTGCACTCAT 66022 Query 104446 CTCAAAGTGGGCTGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATCTC 104504 ||| || || || || || | ||| || || | | | ||| | || Sbjct 66023 TAGTAAGACAGCAGGAGGGATAGGTTTAGCA-ATACACAAAATACGTGCCTCCAGTTCAT 66081 Query 104505 GTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACG 104564 ||||| || |||||||| || || |||| ||||| || ||||| | |||| || | Sbjct 66082 ACATTCGCGGCACAAATGGGCATTCCAATGGGATTATACCTATGCTCAGAATATTCAATG 66141 Query 104565 CCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATC 104621 || || || ||||| |||| | ||| | |||| || || | || |||| | Sbjct 66142 ATACTGCTCGTTATGTTGATCAGGGAGGGGGAAAAAGAAAAGGTTCATTTGCCATCTACC 66201 Query 104622 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACG 104681 | ||||||||||| || ||||| | || ||||| || | || ||||| ||| | Sbjct 66202 TAGAGCCATGGCATGCTGATATTTTTGAATTCCTAGATCTACGAAAAAACCATGGTTCAG 66261 Query 104682 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||||| | || | || | |||| || | ||||| ||||| || |||||||| | Sbjct 66262 AGGAGTCAAGGGCTAGGGACTTGTTCTATGCATTGTGGATCCCAGACCTTTTCATGAAAA 66321 Query 104742 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 | ||||| | | || || ||| || | | || ||||| Sbjct 66322 GGGTTGAAGCTAATGAAAACTGGACTTTGATGTGCCCAGA 66361 >seq41 Length=32257 Score = 100 bits (110), Expect = 3e-16 Identities = 283/424 (67%), Gaps = 18/424 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || ||||| | ||||| || |||| || ||||| | ||||| | || || ||| Sbjct 16664 TCTAGTATATCTGCACGATTAGTACCGGCCATCACAACTACACCTGATG-ATGATTTAAA 16722 Query 9617 -CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG-----CT 9670 |||||||| ||| ||||| ||| || | || | ||||| |||||| || | | Sbjct 16723 GCCATCCATTTCTACCAAAATTTGATTTAATGTATTTTCCCTTTCATCGTTAGAACCACC 16782 Query 9671 GGCATA-CCACCAG-CACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 |||| | || || | || | || ||| || | |||||| || |||||||| |||| | Sbjct 16783 GGCAAAGCCTCCTCTCGCT-CTTTTCTTACCAATGGCATCTATTTCATCAATAAAGATTA 16841 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 | | || ||||| | ||| ||||| ||||||| |||||| ||| ||| | || Sbjct 16842 TTGAAGGGGCATTTTTTCTAGCATTCTCAAATAGATCCCTTACACGACTGGGGCCGATAC 16901 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGACATTAGATTCA 9847 |||| || | ||| | || | || | || || | | ||| || || | | ||| Sbjct 16902 CAACGAATACCTCAATGAAATCTGATCCAGAT-ATGGAGTAGAATGGAACTTGGGCTTCC 16960 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || |||| || ||| ||||| || ||||||||||| || || || || || Sbjct 16961 CCGGCAACAGCCTTGGCAAGAAGCGTTTTACCCGTACCAGGAGGTCCACAAAGCAGTGCG 17020 Query 9908 CCTCGTGGAATCTTGGCGCC---ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| || |||||||| |||| || |||| || || | || |||||||| Sbjct 17021 CCTTTTGGTATTTTGGCGCCCAAACTTTTAA---ATCTTTCTGGATTTTTGAGAAAATCT 17077 Query 9965 ACAA 9968 |||| Sbjct 17078 ACAA 17081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259779293600