Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650105.1_202016-05-23] 140 sequences; 6,878,190 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq65 123 6e-23 seq56 114 3e-20 >seq65 Length=192560 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 || |||| || | |||||| || || || ||||| ||||||||||| | ||| || | Sbjct 118682 AGCCTTAACACTAAGTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGA 118623 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || || |||| || || || || || || || |||||||| || || |||| ||| ||| Sbjct 118622 CCGTCCTCCAATTGTTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCC 118563 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || || ||||| || || ||| ||| ||||| || || Sbjct 118562 TTGTCTTGAATCTTAGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTT 118503 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| || || |||||||| | |||||||| Sbjct 118502 ATGGTTTTACCCGTAAGTGTTTTTACAAATATTTGCATTTT 118462 >seq56 Length=83948 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| ||||||||||| || || || || | || || | || ||||| || ||||| || Sbjct 38161 AGTAGACTCTTTTTGAATATTGTAGTCTGACAGAGTGCGGCCGTCTTCTAGTTGCTTACC 38102 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || || || |||||||| ||||| |||| ||| ||||| ||||| ||||| || Sbjct 38101 AGCAAAAATCAGTCGTTGTTGATCAGGTGGAATTCCCTCCTTATCCTGAATCTTAGCCTT 38042 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || |||||||| || ||| | || || || | ||||| || || |||||||| || Sbjct 38041 AACATTTTCGATAGTATCACTGGGCTCTACTTCCAATGTGATGGTTTTACCCGTGAGTGT 37982 Query 211097 CTTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 37981 TTTCACAAATATTTGCAT 37964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149920771100