Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq55 132 5e-26 seq67 111 2e-19 seq35 96.9 4e-15 >seq55 Length=91196 Score = 132 bits (146), Expect = 5e-26 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 117039 GCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATAT 117098 ||| |||||||| | |||| || || || | || |||||||| || ||| |||||||| Sbjct 50015 GCCAGGTGGCCTACACGGCAGTGGAAGGAATTTTATTTTCGGGTAGCTTCTGCGCCATAT 50074 Query 117099 TTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCA 117158 ||||||| || |||||||| ||||||||||| || || || |||||| || ||||||| Sbjct 50075 TTTGGCTGAAAAAACGCGGGCTCATGCCCGGGCTAACCTTTTCCAACGAACTAATCTCCA 50134 Query 117159 GGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 ||||||||||||| || ||| |||| |||| Sbjct 50135 GGGACGAGGGTCTACACGCCGAGTTTGGATGTT 50167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||||||||| |||| || || ||||| || || ||||| ||| || || ||| | Sbjct 49567 TACAAAAAGGCTCAGGCTTCATTTTGGACAGTTGAAGAGGTTGACTTGGGCACCGACTCT 49626 Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||||| | | |||| ||| |||||| || || || ||||| ||| ||||||| Sbjct 49627 CGCGACTGGTTGGGTTTGACTGACGGCGAGCGGCACTTTATAAAGCATGTGTTGGCCTTC 49686 Query 116768 TTCGCCGCCAG 116778 || || ||||| Sbjct 49687 TTTGCGGCCAG 49697 >seq67 Length=197426 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||||||||| |||||||| || ||||| |||||||| ||| | || || ||| | Sbjct 118459 AAAAATGCAAATATTTGTAAAAACACTTACGGGTAAAACCATAACCCTTGAGGTGGAACC 118518 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | ||| | |||| || |||| ||||| ||||| || ||| | || Sbjct 118519 TAGTGATACTATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCCGA 118578 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || |||||||| || | || || ||||| |||| |||| || || || || || Sbjct 118579 TCAACAACGACTAATTTTTGCTGGAAAACAATTGGAGGACGGTCGTACACTTTCAGATTA 118638 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||||| || ||||| | ||||| || ||||||| Sbjct 118639 TAACATACAAAAGGAATCGACGCTTCACTTAGTGTT 118674 >seq35 Length=66782 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || ||||| |||||||| ||||||||||| | || || || ||| Sbjct 28862 ATGCAAATATTTGTGAAAACACTCACGGGTAAAACCATCACATTGGAAGTAGAGCCCAGT 28803 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| || |||| || || ||||| || || | || || Sbjct 28802 GATACTATCGAAAATGTTAAGGCTAAGATTCAGGATAAGGAGGGAATTCCACCTGATCAA 28743 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| || | || || || || || || |||| ||||| || |||||||| Sbjct 28742 CAACGACTGATTTTTGCTGGTAAGCAACTAGAAGACGGCCGCACTCTGTCAGACTACAAT 28683 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || || ||| | || ||||| | |||||| Sbjct 28682 ATTCAAAAAGAGTCTACTTTGCATTTGGTGTTG 28650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218356328560