Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq67 111 1e-19 seq35 96.9 3e-15 >seq67 Length=197426 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || ||||| ||||| ||||| || || | | ||| || || |||||||| Sbjct 118666 GTGAAGCGTCGATTCCTTTTGTATGTTATAATCTGAAAGTGTACGACCGTCCTCCAATTG 118607 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 ||| || ||| | || |||| ||||||||| ||| | || ||||| || ||| | Sbjct 118606 TTTTCCAGCAAAAATTAGTCGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGAATCTT 118547 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | | ||| ||| |||| || || |||| ||| ||| |||| || || Sbjct 118546 AGCCTTTACATTTTCAATAGTATCACTAGGTTCCACCTCAAGGGTTATGGTTTTACCCGT 118487 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTA 18330 | |||||||||||| ||||||||||||| Sbjct 118486 AAGTGTTTTTACAAATATTTGCATTTTTA 118458 >seq35 Length=66782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| ||| | |||| || | || || ||||||||||| |||||||| | Sbjct 28635 TCCACCGCGTAATCTCAACACCAAATGCAAAGTAGACTCTTTTTGAATATTGTAGTCTGA 28694 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||| | ||| || || ||| | || |||| ||||||||| || Sbjct 28695 CAGAGTGCGGCCGTCTTCTAGTTGCTTACCAGCAAAAATCAGTCGTTGTTGATCAGGTGG 28754 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| ||| | ||| || | | | | ||| |||| |||||| Sbjct 28755 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTTTCGATAGTATCACTGGGCTCTAC 28814 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || || | |||||| ||||| |||||||| Sbjct 28815 TTCCAATGTGATGGTTTTACCCGTGAGTGTTTTCACAAATATTTGCAT 28862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343394353595