Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq29 143 2e-29 >seq29 Length=96100 Score = 143 bits (158), Expect = 2e-29 Identities = 406/621 (65%), Gaps = 2/621 (0%) Strand=Plus/Plus Query 37930 TATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACAC 37989 |||||||| | ||| || | ||||| || | || |||| ||| || ||| ||| Sbjct 82808 TATAATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCATCTGGGCAC 82867 Query 37990 ATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAAT 38049 || | || ||| | ||||| ||| || | || ||| || | || || | ||| ||| Sbjct 82868 ATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGGATCCACAAT 82927 Query 38050 GCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA 38109 ||| || || || | | || | || || || || |||| || ||| Sbjct 82928 GCATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCGTAGATCTAGG 82987 Query 38110 AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTA 38169 || || || |||||||| |||||||| |||| || || | | || ||| |||||| Sbjct 82988 AATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGCAAATGAACCTTTTCTTTTT 83047 Query 38170 TCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATA 38229 | |||||||||| || ||| | | | || | ||| ||||||| | |||||||| || Sbjct 83048 CCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTGAGCATAGGTATAATC 83107 Query 38230 CCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATC 38289 ||||| || | || ||| | ||| || || | || || ||||| || ||| Sbjct 83108 CCATTGGAATGCCCATTTGTGCCGCGAATGTATGAACTGGAGGCACGTATTTTGTGTATT 83167 Query 38290 GACAATCCTATTCCACCTGCATGTTTTGATATTAAA-GCGCATTGTTTTAACGTATCAAA 38348 | || ||||| || ||||| ||| || || | | || ||||| | | || ||||| Sbjct 83168 GCTAAACCTATCCCTCCTGC-TGTCTTACTAATGAGTGCACATTGGGTAAGGGTGTCAAA 83226 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408 ||||| ||| |||||||| || || | || || |||||||||||||| || Sbjct 83227 AATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAGCTAGACATTTGAGGAAA 83286 Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 | |||||| | ||| || | ||| |||| || || || || |||| | |||| || Sbjct 83287 TTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAATAATTTCTTGGACATGTA 83346 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 ||| || || || || || ||| |||||| | ||| ||||| || || || | Sbjct 83347 ATTGTAAGTCTCCATGGCACGATCAATATCATTGGAGTGTATACCGCAAGCAACTCTGAC 83406 Query 38529 TAGCATATGTTGTGGTCTTTC 38549 || | ||| || || ||||| Sbjct 83407 GAGAAGATGCTGAGGCCTTTC 83427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524032790640