Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20microti_20[genbank_20GCA_5F001650135.1_202016-05-23] 131 sequences; 6,438,007 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq29 172 7e-38 seq55 123 3e-23 >seq29 Length=96100 Score = 172 bits (190), Expect = 7e-38 Identities = 645/996 (65%), Gaps = 44/996 (4%) Strand=Plus/Plus Query 65559 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 65618 || |||||||| ||||| || | ||| || || ||||||||||| ||||| |||||| Sbjct 82388 TCAGCTAATCCCTGAACTCCTACACCTATTGGCCTATGTCTCTTGTTAGAATATTCAGCC 82447 Query 65619 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 65678 || |||| ||| |||||||| ||||||||| |||| | ||| || || ||| Sbjct 82448 TCAGGAACAGGGTAATAATTCTCGTCTATAATTCTATTCAAATTGAAAGTAAGTATCTTG 82507 Query 65679 --ACCACATCCT--TCAGTTTGAGAAAATCAAATCGCTCA--TCTA----TTACAAACAT 65728 | || | | | | || ||| |||||| | | || ||||| || | Sbjct 82508 CAAGCAGAATGTAATAACTT----AAAGTCAAATTCGAGAGTTTTAGTGTTTACATACTT 82563 Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 |||||| | || || || ||||| || || || ||||||| | | |||||| | Sbjct 82564 TGGCAATGCTAGTGAAGCGAGGTTACACACTGCAACTTCATTAGGAGATGTATATTGCAC 82623 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 ||||| ||| | || ||| |||| || || |||| || | ||||| ||| | Sbjct 82624 AATCTCGCAGCATAAGTTGCTAGACTTAATAGTACCTATGTTCTTCTGATTTGACTTGTA 82683 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 ||||| || ||||| || | ||| | ||||| || |||||||| || |||| || || Sbjct 82684 ATTACAAGCGTCCTTGTATAACATGTAAGGAGTTCCTGTTTCAATTTGCGATTGTAAGAT 82743 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT---TCGTA 65965 || ||| | | | | || | | | |||| | | | || | || || Sbjct 82744 AGCAAACCAAAGGGTTTGCGCGGGAACTGT---TTTGCGACCCATGCCTTTCGACTCATA 82800 Query 65966 --TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 66023 ||||||||| || ||| || || ||||||||||| | || | ||| ||| ||| Sbjct 82801 ACTAGTGTATA--ATTTTTCAAATTCCTCTCCCCAAACCTGATCTAGTCCTCTACACTCA 82858 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 66083 || || |||||||| | ||| | | | | | | | || | |||||| || || || || Sbjct 82859 TCTGGGCACATCAAAGTCCAGTTTTCATTAGCTTCAACCCTTTTCATGAAAAGGTCTGGG 82918 Query 66084 ATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 ||||| | || ||| || || || || | || ||||| || || ||| Sbjct 82919 ATCCACAATGC-ATAGAACAAGTCCCTAGCCCTTGACTCCTCTGAACCATGGTTTTTTCG 82977 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 ||||| ||||| | | ||||||| |||||| || || | ||| ||||| || | Sbjct 82978 TAGATCTAGGAATTCAAAAATATCAGCATGCCATGGCTCTAGGTAGATGGC---AAATGA 83034 Query 66203 AGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | || ||| ||| ||||||||||| | || | ||| || | ||| | | ||| Sbjct 83035 A--CCTTTTCTTTTTCCCCCTCCCTGATCAACATAACGAGCAGTATCATTGAATATTCTG 83092 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG-- 66315 | ||| || ||||| |||||||| ||||| || ||| || || | ||| | Sbjct 83093 AGCATAGGTATAATCCCATTGGAATGCCCATTTGTGCCGCGAATGTA---TGAACTGGAG 83149 Query 66316 -CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 66374 |||| || || |||| || |||||| || ||||| | ||| || | ||| ||| Sbjct 83150 GCACGTATTTTGTGTATTGCTAAACCTATCCCTCCTGCTGTCTTACTAATGAGTGCACAT 83209 Query 66375 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 66434 | | | || ||| | || || ||| ||||||| | || | ||| || || ||| Sbjct 83210 TGGGTAAGGGTGTCAAAAATACCAGAAATAGAATCATCCTTAATATCAAGAAGGAAGCAG 83269 Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||||||||| || ||||||| | || || | || |||| ||||| |||| Sbjct 83270 CTAGACATTTGAGGAAATTTAGTTCCAGAGTTGAAGAGTGTGGGAGTGGCGTGGATAAAT 83329 Query 66495 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC 66529 |||| | || | ||| |||||| ||||| || || Sbjct 83330 AATTTCTTGGACATGTA-ATTGTAAGTCTCCATGGC 83364 >seq55 Length=91196 Score = 123 bits (136), Expect = 3e-23 Identities = 116/145 (80%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||| ||||| | || ||| ||||||||||||||| || |||| ||||||||||| Sbjct 50173 ACATATAACATCCAAACTCGGCGTGTAGACCCTCGTCCCTGGAGATTAGTTCGTTGGAAA 50114 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || || |||||||| || || || ||||| ||||||||||||| |||| | | | || Sbjct 50113 AGGTTAGCCCGGGCATGAGCCCGCGTTTTTTCAGCCAAAATATGG-CGCAGAAGCTACCC 50055 Query 36269 GAAAAGAAAATTCCTTCTACTGCCG 36293 ||||| ||||||||||| ||||||| Sbjct 50054 GAAAATAAAATTCCTTCCACTGCCG 50030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171722242040